CD-HIT protein clustering - difference length

From here

Please note that by default, cd-hit only lists matches where sequences in db2 are not longer than sequences in db1.
You may use options -S2 or -s2 to overwrite this default.

changed milestone to %Analyses

added Analysis Enhancement Investigation labels

Trying -s2 -0.9:

-s2 length difference cutoff for db1, default 1.0 by default, seqs in db1 >= seqs in db2 in a same cluster
if set to 0.9, seqs in db1 may just >= 90% seqs in db2

mentioned in commit c84c44d1

The results did not change much.

closed

Change to -s2 0.5

mentioned in commit 214f07ad

mentioned in commit 1002a9e8