Add zymo workflow

config/rumen/config.yaml

@@ -3,7 +3,7 @@
 
 # Steps to be done
 # steps: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
-steps: ["preprocessing", "assembly"]
+steps: ["preprocessing", "assembly", "mapping"]
 steps_annotation: ["rgi", "plasflow", "minced", "barrnap", "kegg"] # prodigal is run in any case
 steps_analysis: ["quast", "mash", "mashmap", "fastani", "mummer", "cdhit", "diamond", "cov"]
 steps_taxonomy: ["kraken2", "kaiju"]