Skip to content
Snippets Groups Projects

Add zymo workflow

Merged Add zymo workflow
zymo into bright_future
Merged Valentina Galata requested to merge zymo into bright_future
Viewing commit 2ea53754
Prev Next
Show latest version
3 files
+ 17
− 17
Compare changes
  • Side-by-side
  • Inline
Files
3
config/zymo/config.zymo.yaml
+ 3
− 2
# Main requirements
work_dir: "/scratch/users/sbusi/zymo"
results_dir: "results"
results_dir: "/scratch/users/sbusi/zymo/results"
data_dir: "/scratch/users/sbusi/zymo/Zymo/results"
ref_genomes_dir: "/scratch/users/sbusi/zymo/results/data_ref_genomes"
@@ -9,7 +9,8 @@ ref_genomes_dir: "/scratch/users/sbusi/zymo/results/data_ref_genomes"
assemblers:
sr: ["megahit", "metaspades"]
lr: ["flye", "canu"]
hy: ["metaspadeshybrid", "operamsmegahit", "operamsmetaspades"]
# hy: ["metaspadeshybrid", "operamsmegahit", "operamsmetaspades"]
hy: ["metaspadeshybrid"]
# Zymo reference genomes
ref_genomes: