Skip to content
Snippets Groups Projects

Add zymo workflow

Merged Valentina Galata requested to merge zymo into bright_future
4 files
+ 77
38
Compare changes
  • Side-by-side
  • Inline
Files
4
@@ -42,6 +42,6 @@ snakemake -s ${ONTP_SMK} -rp --jobs 10 --local-cores 1 \
--cluster-config ${ONTP_SLURM} --cluster "${ONTP_CLUSTER}" --unlock
# run the pipeline
snakemake -s ${ONTP_SMK} -rp --jobs 10 --local-cores 1 \
snakemake -s ${ONTP_SMK} -rpn --jobs 10 --local-cores 1 \
--configfile ${ONTP_CONFIG} --use-conda --conda-prefix ${CONDA_PREFIX}/pipeline \
--cluster-config ${ONTP_SLURM} --cluster "${ONTP_CLUSTER}"
Loading