Skip to content
Snippets Groups Projects
Select Git revision
  • 65-mock-identify-characterize-genes-in-flye-which-explain-low-q-s-ration-in-diamond-hits
  • bright_future
  • cdhit
  • cleanup
  • master default protected
  • zymo
  • v1.0
  • rev01
  • v0.1
9 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.013Nov121110965328Oct27201916151413128729Sep221615141110928Aug212019181716141310331Jul302423222017161413109872130Jun2926252414131211109843230May2928272615141312119876130Apr29262524232221201918161525Mar191817preproc: fixed a bug when linking to SR filesconfig: mv sub-folders: lowcase sample namestax: added prefix to log file namespreproc: fixed a bug in linking LR file, local rulesinit: added localrule for linking filesupdated folder nameassembly: operams cmd update (keep clustering) (issue #104)assembly: operams cmd update (issue #104), metaspadeshybrid - scaffolds as output (issue #105)reprocessing: rm realpath when linkingconda: updated snakemake YAML (requirements)config: major updateconfig: rm gis20config: added rumen (fast5)conda: bbmap: added missing '=' between name and versionanalysis/taxonomy: fixed a bug: proc LR/SR for mash and kraken2mapping: fixed a bug: proc LR instead of raw ones for mappingupdated rules for running SibeliaZ against zymoupdated slurm and Snakefile(s)fixed errorsfinal SibeliaZ rule updatedadded rules and config parameters for SibeliaZfast5/preproc: mv basecalling to fast5 workflow (issue #103)fast5/preproc: mv basecalling to fast5 workflow (issue #103)analysis: mv gene cov from mapping to analysisassembly: replaced realpath when linkingconda: simplified requirementsworkflow: raw data download (issue #102)conda environment for sibeliazUpdate Snakefileconfig: rm gangesMerge branch 'zymo' of https://git-r3lab.uni.lu/susheel.busi/ont_pilot_gitlab into zymoupdated Snakefile to fix key errors in rule comparisonUpdate SnakefileRules for tables to compare different assemblers and their mapping to zymoUpdate SnakefileComparing the headers in comparision of read-type and assembler against zymoadded header extraction rules to Snakefileupdated launcher fileadded rules for diamond analysesupdated rules for downloading and concatenating reference genomes