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Created with Raphaël 2.2.030Jun2926252414131211109843230May2928272615141312119876130Apr29262524232221201918161525Mar191817added quast and plasflow to report (issue #27)fixed a type in analysis.smk (rules/steps) in target pathsanalysis step update: updated quast/bbmap/cdhit conda YAML; other minor updatessbatch.sh -- more cores for the pipelineminor fix of regi setup rulerm CHANGELOG and not used configupdated/added messages to rules; rgi db is loaded in sep. rulereplaced 'shell touch' by 'snakemake touch' for step status targetsupdated prodigal runtime in slurm.yamlminor updates in config.yamlmade original plasflow output tmpupdated slurm.config: plasflow should run on bigmemminor updates and bug fixes; added minced jar to its rule (issue #42)readme updateadded rule to install minced (issue #42)added minced as submodule (issue #42)new rules to setup tools/data; added casc installation (issue #41)added casc as submodule (issue #41)added conda YAML for mmseqs2minor change in conda YAML for cd-hitrm old conda YAML for cd-hitnew conda YAML for cd-hitrm not used conda YAML filesconda YAML files for casc and minced (issue #41 and #42)bug fixes for rgi and plasflow rulesupdated gitignorereport: minor updateupdared diamond env (old one could not be build)updared rgi env (old one could not be build)report: initial setupconfig and slurm updateAdded "certified fresh" badge.65-mock-identif…65-mock-identify-characterize-genes-in-flye-which-explain-low-q-s-ration-in-diamond-hitsmv r.yml in report/report: incl rmarkdown in r.yamlmv figures.yml to config/rm data and src_SBB in report/rm src/; renamed snakemake file in report/mv figures to reportmv figures/srcmajor update: mapping, assembly, annotation, analysis (not all tested)