Skip to content
Snippets Groups Projects
Select Git revision
  • 65-mock-identify-characterize-genes-in-flye-which-explain-low-q-s-ration-in-diamond-hits
  • bright_future
  • cdhit
  • cleanup
  • master default protected
  • zymo
  • v1.0
  • rev01
  • v0.1
9 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.09Aug23Apr22211915141325Mar191210853226Feb2528Jan2725211222Dec8432130Nov2726241918171613121110965328Oct27201916151413128729Sep221615141110928Aug212019181716141310331Jul302423222017161413109872130Jun2926252414131211109843230May2928272615141312119876130Apr2926added licensev1.0 masterv1.0 masterfigures: fix for mmseqs2 upsetr plots using cowplot (issue #127)rev01rev01figures: updated fig scripts (and some func.s in utils.R) to optimize figs for submission (issue #127)notes: metap: added credentials for (raw) data access; updated readme for reprod. (issue #127)notes: metap: added ben's cmds; updated readme (issue #127)archive: incl ave. metat cov. for genes (GDB), updated readme (issue #128)workflow: utils.py: fixed a bug in ave_gene_cov (issue #128)archive: script for code archive (for paper, issue #127)added conda env yaml for biopython (was removed by accident)readme/archive: rm large files from results archivereadme: minor change in README_REPROD.mdarchive: scripts for results archivereadme: minor change in README_ARCHIVE.mdreadme: updated notes; added file for results archivenotes: high conf prots: more statsreadme: updated (issue #127)report: table and stats: assembly intersection and metat covreadme: updated readme; added readme for reproducing results (for pub) (issue #127)workflow: annottaion: hmm/kegg: db file not required if not set (issue #127)configs: removed not required steps (issue #127)rm not relevant folders and files (issue #127)updated readme (issue #127)figures: diff layout for rgi figsv0.1v0.1report: gdb: metap stats: rm dupl set(...) in collect_metap_prots in utils.py (issue #97)report: gdb: metap stats (issue #97)figures/stats: print stats (for paper) when creating barrnap figfigures: fixed type in kingdom names for barrnap fig.s (issue #125)figures/stats: print stats (for paper) when ceating prodigal fignotes: updated rrna notes in gdb_barrnap_metat.md (issue #124)notes: gdb_rgi_aro3004454_flye.md: rm one line which was from previous version (issue #124)readme updatefigures: minor change in rgi figures - letters for subplotsnotes: updated rgi/card other notes (issue #124)notes/figures: updated rgi/card example for gdb/flye (issue #124)notes: updated gdb_mmseqs2_uniq_metat.md (issue #124)config: minor change in report shell scriptconfig: rumen: changed work dir path (output was moved from SB's to VG's scratch)config: gdb: increased runtime for analysis_mash_sketch_lrconfig: unified sbatch scripts, snakemake's conda env path as argpreprocessing: changed qin/qout params in rm_host_bbmap_lr_metag (issue #124)