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  • 65-mock-identify-characterize-genes-in-flye-which-explain-low-q-s-ration-in-diamond-hits
  • bright_future
  • cdhit
  • cleanup
  • master default protected
  • zymo
  • v1.0
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Created with Raphaël 2.2.013Oct128729Sep221615141110928Aug212019181716141310331Jul302423222017161413109872130Jun2926252414131211109843230May2928272615141312119876130Apr29262524232221201918161525Mar191817analysis/annotation: mv diamond from annotation to analysis; minor changesanalysis: mashmap: only one comparison (instead of both) (issue #95)analysis: mummer/dnadiff: only one comparison (instead of both) (issue #93)analysis: cdhit: only one comparison (instead of both)analysis: added diamond (pairwise) (issue #78)analysis: minor changeanalysis: rule to rename protens in FAA, updated cdhit inputanalysis: added mummer/dnadiff (issue #93)analysis: added a forgotten commaanalysis: added fastani (issue #80)analysis: added mashmap (issue #95)analysis: quast: minor changesanalysis: cdhit: simplified code, udpated params (issue #68)analysis: simplified code for mashanalysis: rm unused code for mmseqs2analysis: rm code for circ contigssetup: updated operams setup (issue #98, issue #43)assembly: updated operams version (issue #98)bug fix: operams installtion (issue #43)fix: rm dependency check from operams installation cmd (issue #43)fixed a bug: wrong symbol in operams installation cmd (issue #43)fixed a bug: link for final fasta for flyeassembly: updated input (preproc files); operams update; not finished - polishing/filteringupdated operams installation rule and log file name for rgi dbminor: renamed two rules in workflow/rules/preprocessing.smkenvs: simplified and updated assembler yaml filesoperamse: checked out release v0.8.3 (latest) (issue #43)setup rules: minor changes; operams setup (issue #43)envs: added operams yamladded operams as a git submodule (issue #43)preprocessing: links to final filesenvs: simplified yaml for bbmap/fastqc/nanostatnew conda YAML for flye (issue #90)updated GDB config files (issue #54)host contamination filtering w/ bbmap/bbtools (issue #54); other minor changesadded comment to diamond rulenotes: script for segmentation analysis of contig cov (issue #84)report: updated plots (mostly themes)notes: plots and multimodality test for contig cov (issye #84)report: added shapes to cdhit scatter plot