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Created with Raphaël 2.2.019Apr15141325Mar191210853226Feb2528Jan2725211222Dec8432130Nov2726241918171613121110965328Oct27201916151413128729Sep221615141110928Aug212019181716141310331Jul302423222017161413109872130Jun2926252414131211109843230May2928272615141312119876130Apr292625readme/archive: rm large files from results archivereadme: minor change in README_REPROD.mdarchive: scripts for results archivereadme: minor change in README_ARCHIVE.mdreadme: updated notes; added file for results archivenotes: high conf prots: more statsreadme: updated (issue #127)report: table and stats: assembly intersection and metat covreadme: updated readme; added readme for reproducing results (for pub) (issue #127)workflow: annottaion: hmm/kegg: db file not required if not set (issue #127)configs: removed not required steps (issue #127)rm not relevant folders and files (issue #127)updated readme (issue #127)figures: diff layout for rgi figsv0.1v0.1report: gdb: metap stats: rm dupl set(...) in collect_metap_prots in utils.py (issue #97)report: gdb: metap stats (issue #97)figures/stats: print stats (for paper) when creating barrnap figfigures: fixed type in kingdom names for barrnap fig.s (issue #125)figures/stats: print stats (for paper) when ceating prodigal fignotes: updated rrna notes in gdb_barrnap_metat.md (issue #124)notes: gdb_rgi_aro3004454_flye.md: rm one line which was from previous version (issue #124)readme updatefigures: minor change in rgi figures - letters for subplotsnotes: updated rgi/card other notes (issue #124)notes/figures: updated rgi/card example for gdb/flye (issue #124)notes: updated gdb_mmseqs2_uniq_metat.md (issue #124)config: minor change in report shell scriptconfig: rumen: changed work dir path (output was moved from SB's to VG's scratch)config: gdb: increased runtime for analysis_mash_sketch_lrconfig: unified sbatch scripts, snakemake's conda env path as argpreprocessing: changed qin/qout params in rm_host_bbmap_lr_metag (issue #124)init: split link_input_files into LR/SR (better for updates, no effect on output)figures: added rgi figreports: minor bug fix in condition to skip rgi plots (no hits, should have no effect)figures: added barrnap figfigures: added diamond/db figfigures: added mmseqs2 figfigures: added prodigal gene count figfigures: added mash figfigures/reports: added ggplotify to R env