Skip to content
Snippets Groups Projects
Select Git revision
  • 65-mock-identify-characterize-genes-in-flye-which-explain-low-q-s-ration-in-diamond-hits
  • bright_future
  • cdhit
  • cleanup
  • master default protected
  • zymo
  • v1.0
  • rev01
  • v0.1
9 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.05Mar3226Feb2528Jan2725211222Dec8432130Nov2726241918171613121110965328Oct27201916151413128729Sep221615141110928Aug212019181716141310331Jul302423222017161413109872130Jun2926252414131211109843230May2928272615141312119876130Apr292625242322figures/report: added sample names to const.Rfigures/report: added patchwork to R envfigures: changed sample order in configupdated readmenotes: added notes for GDB and barrnap/metat analysis (incl a script)figures: added workflow for manuscript figures (not finished, issue #123)notes: added notes for gdb/rgi (amr)notes: updated gdb_mmseqs2_uniq_metat.mdcleanup: rm workflow/rules/basecalling.smk because it is part of workflow_fast5cleanup: rm old notesnotes: gdb, mmseqs2, metat cov (issue #121)reports: added bash script (and a note in readme)report: tab w/ unique mmseqs2 prots incl metat cov (issue #121)updated readmeanalysis: FAA files for metaP analysis (all, cluster representatives) (issue #97)report: mmseqs2: highlight only combis included in top N shown (issue #119)analysis: mmseqs2: bug fix (wrong db type) (issue #119); metap - whether faa output is tmpreport: mmseqs2 (issue #119)analysis: mmseqs2 prot clustering (issue #119)report: extra gdb amr analysis (issue #118)report: added imports to const.R and utils.Rnew workflow: gene calling (related to issue #113)bright_futurebright_futurereport: fixed upsetr issue (issue #112); output pdf - empty plot if not in steps/no dataconfig: updated aquiferconfig: updated aquiferconfig: updated rumenannotation: plasflow: increased number of threads (to have more mem for the job)annotation: hmmsearch: redirecting stdout to /dev/null to avoid too large log fileszymo extra: gene/blastn search (issue #111)Merge branch 'zymo' into 'bright_future'zymo: config: updated rumen (to match bright_future branch); rm unused zymo configszymozymoconfig: updated rumenzymo: added mummer/dnadiff (issue #111)zymo: genes.R: added kraken2 upsetr plots (issue #111)zymo: plots based on assembly gene summary table (issue #111)report/zymo: utils.R: minor update of func set_tool_order (needed for #111)zymo: get kegg info (kegg api) (issue #111)zymo: config: updated zymo slurm and sbatch fileszymo: gene summary tab: added best kegg hit (issue #111)zymo: gene summary tab: added gene length (issue #111)