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Created with Raphaël 2.2.024Jul23222017161413109872130Jun2926252414131211109843230May2928272615141312119876130Apr29262524232221201918161525Mar191817renamed mash rulesupdated targets in mapping step (issue #66)report updateupdated GDB contig filesadjusted annotation step (issue #66, not tested yet)cleanup: replace out/err log by log; changed params for metaquastcleanup: replace out/err log by logadded contig filtering (not adjusted yet) (issue #66)report update (incl metat polished assemblies) (issue #52)cleaned up GDB configupdated GDB config filesassembly polishing w/ racon and metat (issue #52)added notes (short scripts etc.) incl. scripts for issue #65cleanup: rm backup filesreport: added diamond density plotadded mash screen analysis (issue #64)updated slurm.yaml for GIS20: longer runtime for mapping_assembly_uniqupdated configs: updated mapping rule names in slurm configs; other minor changesUpdate cluster.jsoncdhitcdhitUpload New FileUpload New FileUpload New FileUpload New Filesnakefile and relevant config files for clustering FLYE versus other assemblies with cdhitupdated configs for ganges dataset (issue #60)forgot to rm mapping and coverage from assembly stepupdated ganges config files; fixed a bug in init.smk and basecalling.smkupdated ganges config.yaml (merged); changed how input files are linkedchanged how input files are linkedupdated ganges config.yamlconfig files etc for ganges sampleadded configs for GIS20 (issue #57)minor changes in sbatch.sh (GDB, Zymo)renamed in config/: Zymo-GridION-EVEN-BB-SN to Zymoreport: added mash figure (ssiue #59)updated fastqc.yamlupdated gitignorechanged init: fixed a bug in init.smk (issue #56)changed init: fixed a bug in init.smk (issue #56)changed init: fixed a bug and rm unsed file (issue #56)