Dunno

rules/Analysis/MGMT.rules

@@ -131,7 +131,6 @@ rule ANALYSIS_MG_VARIANT_CALLING:
 
         ### run_mpileup {input[0]} {input[1]} $VCF_MPU
         samtools mpileup -uf {input[0]} {input[1]} | bcftools view -vcg - > $VCF_MPU
-        wait
         bgzip -c $VCF_MPU > $VCF_MPU.gz
         tabix -f -p vcf $VCF_MPU.gz
 
@@ -145,8 +144,6 @@ rule ANALYSIS_MG_VARIANT_CALLING:
         bgzip -c $VCF_PLT > $VCF_PLT.gz
         tabix -f -p vcf $VCF_PLT.gz
 
-
-
         ### "Merging outputs "
 
         ## Must remove colons from the contig names in upstream steps. Unable to merge the variants