Commits · 0586821bdf6553e27f59de9ad35694843b23b451 · IMP-dev / IMP

Aug 25, 2015
- Dockerfile, R plot script · 1f3dc511
  Shaman Narayanasamy authored 9 years ago
  
  1f3dc511
- remove de-duplicate step for MG data · d9110373
  Yohan Jarosz authored 9 years ago
  
  d9110373
- Quast installation and rule · 8e2f3c3a
  Shaman Narayanasamy authored 9 years ago
  
  8e2f3c3a
Aug 24, 2015
- perform trim on uniq files · d7e0a11f
  Yohan Jarosz authored 9 years ago
  
  d7e0a11f
Aug 17, 2015
- some debug · 1c28f624
  Yohan Jarosz authored 9 years ago
  
  1c28f624
- index maximum of fasta files in the init · fd369ea8
  Yohan Jarosz authored 9 years ago
  
  fd369ea8
Jul 25, 2015
- Changed input variant call file, since current one problematic · 8f828939
  Shaman Narayanasamy authored 9 years ago
  
  8f828939
Jul 21, 2015
- rm download db from main rule · 88705fab
  Yohan Jarosz authored 9 years ago
  
  88705fab
- Correction of krona plot command · f4f90cc5
  Shaman Narayanasamy authored 9 years ago
  
  f4f90cc5
- add report to output · 7dc23aaf
  Yohan Jarosz authored 9 years ago
  
  7dc23aaf
- correct stat output dir · d8416d56
  Yohan Jarosz authored 9 years ago
  
  d8416d56
- correct stat output dir · 3691ca64
  Yohan Jarosz authored 9 years ago
  
  3691ca64
- test renaming stat output files · d6b9cb47
  Yohan Jarosz authored 9 years ago
  
  d6b9cb47
- test renaming stat output files · 1a64e7e3
  Yohan Jarosz authored 9 years ago
  
  1a64e7e3
- test renaming stat output files · d121d199
  Yohan Jarosz authored 9 years ago
  
  d121d199
Jul 20, 2015
- rm old function · 9f0e2d0d
  Yohan Jarosz authored 9 years ago
  
  9f0e2d0d
- arraneg output names · 245b3ec6
  Yohan Jarosz authored 9 years ago
  
  245b3ec6
- Add new output files for stats · 0a9cf3ee
  Shaman Narayanasamy authored 9 years ago
  
  0a9cf3ee
- Add fastqc rules · fc26476c
  Shaman Narayanasamy authored 9 years ago
  
  fc26476c
- fix mistake · b63f0f20
  Yohan Jarosz authored 9 years ago
  
  b63f0f20
- add P_OUT by default · b2f7ddec
  Yohan Jarosz authored 9 years ago
  
  b2f7ddec
Jul 17, 2015
- change output name for htqc tool · f29a0d45
  Yohan Jarosz authored 9 years ago
  
  f29a0d45
- change output name for htqc tool · 4b8a53af
  Yohan Jarosz authored 9 years ago
  
  4b8a53af
- change output name for htqc tool · 5dfe3946
  Yohan Jarosz authored 9 years ago
  
  5dfe3946
- typos · 36f15cee
  Yohan Jarosz authored 9 years ago
  
  36f15cee
- add requirement + fix ht2stat · b210a893
  Yohan Jarosz authored 9 years ago
  
  b210a893
Jul 16, 2015
- Added exception handling for human genome filtering step · 27b14136
  Shaman Narayanasamy authored 9 years ago
  
  27b14136
- rm output dir if exists · f2c09bce
  Yohan Jarosz authored 9 years ago
  
  f2c09bce
- remove --continue parameter for megahit as sometimes it is failing · 8cf197a7
  Yohan Jarosz authored 9 years ago
  
  8cf197a7
- Edit variant calling rules · 9d32ae2e
  Shaman Narayanasamy authored 9 years ago
  
  9d32ae2e
- add trimmimatic db download · 609c21ae
  Yohan Jarosz authored 9 years ago
  
  609c21ae
Jul 10, 2015
- Adjust sortmerna memory parameter · e32c2716
  Shaman Narayanasamy authored 9 years ago
  
  e32c2716
Jul 09, 2015
- add command line wrapper for IMP · bf1c3f6d
  Yohan Jarosz authored 9 years ago
  
  bf1c3f6d
Jul 08, 2015
- change variant calling strategy · bb8aa9ec
  Shaman Narayanasamy authored 9 years ago
  
  bb8aa9ec
Jul 07, 2015
- correction · f183012b
  Shaman Narayanasamy authored 9 years ago
  
  f183012b
- sortmerna mem parameter · ddfc623f
  Shaman Narayanasamy authored 9 years ago
  
  ddfc623f
- add if statement for vizbin · 30a35b48
  Yohan Jarosz authored 9 years ago
  
  30a35b48
- add docker Entrypoint · 8cb747e0
  Yohan Jarosz authored 9 years ago
  
  8cb747e0
- Remove old output file · 65adc8fd
  Shaman Narayanasamy authored 9 years ago
  
  65adc8fd
- some error · b7cd78ee
  Yohan Jarosz authored 9 years ago
  
  b7cd78ee