Commits · 3fa6474949d1311e4eb5dbc5b49bcb2a85dfb0d9 · IMP-dev / IMP

Oct 08, 2015
- Fix bug in R plotting script · 3fa64749
  Shaman Narayanasamy authored 9 years ago
  
  3fa64749
Oct 07, 2015
- Bug fix in R readGff function · ec3b4852
  Shaman Narayanasamy authored 9 years ago
  
  ec3b4852
Oct 02, 2015
- Changed prokka setting to include rRNA annotation · fee9e6f8
  Shaman Narayanasamy authored 9 years ago
  
  fee9e6f8
- R scripts saves data incrementally · 20be7b1d
  Shaman Narayanasamy authored 9 years ago
  
  20be7b1d
- Renaming of analysis steps · 1116d233
  Shaman Narayanasamy authored 9 years ago
  
  1116d233
- Changed names and streamlined rules · 0b2734b9
  Shaman Narayanasamy authored 9 years ago
  
  0b2734b9
Oct 01, 2015
- bug fix · 3f10daa0
  Yohan Jarosz authored 9 years ago
  
  3f10daa0
- migrating back assembly · 1df5ee30
  Yohan Jarosz authored 9 years ago
  
  1df5ee30
- adding files · b43b1185
  Yohan Jarosz authored 9 years ago
  
  b43b1185
- rename files · 9eaed686
  Yohan Jarosz authored 9 years ago
  
  9eaed686
- add missing files · 91c63690
  Yohan Jarosz authored 9 years ago
  
  91c63690
- importting different assembler · 8f6a6065
  Yohan Jarosz authored 9 years ago
  
  8f6a6065
- Merge branch 'dev' into dev_megahit · ccad5ee1
  Shaman Narayanasamy authored 9 years ago
  
  ccad5ee1
Sep 30, 2015
- update IMP version · f81afb72
  Yohan Jarosz authored 9 years ago
  
  f81afb72
Sep 29, 2015
- Megahit assembly working · c510832e
  Shaman Narayanasamy authored 9 years ago
  
  c510832e
- Correct MGMT assembly input · 53ddd62d
  Shaman Narayanasamy authored 9 years ago
  
  53ddd62d
- Migrate assembly to megahit · e75a917f
  Shaman Narayanasamy authored 9 years ago
  
  e75a917f
- Fix cap3 assembly · 405234b2
  Shaman Narayanasamy authored 9 years ago
  
  405234b2
- Comment out MEGAHIT assembly · 530e6812
  Shaman Narayanasamy authored 9 years ago
  
  530e6812
- cap3 parameters · c59055cc
  Shaman Narayanasamy authored 9 years ago
  
  c59055cc
Sep 28, 2015
- new command for megahit · 924b20e6
  Shaman Narayanasamy authored 9 years ago
  
  924b20e6
Sep 25, 2015
- Add latest megahit to Dockerfile · 9b452aff
  Shaman Narayanasamy authored 9 years ago
  
  9b452aff
Sep 11, 2015
- Edit legends and size · 2affa821
  Shaman Narayanasamy authored 9 years ago
  
  2affa821
Sep 09, 2015
- Ddownloading Imp from tarball · e914b639
  Yohan Jarosz authored 9 years ago
  
  e914b639
- some comments · d63f4e44
  Yohan Jarosz authored 9 years ago
  
  d63f4e44
Sep 08, 2015
- increae imp version · 7bd54974
  Yohan Jarosz authored 9 years ago
  
  7bd54974
- fix analysis_mt_fastqc bug · 797cdfa5
  Yohan Jarosz authored 9 years ago
  
  797cdfa5
Sep 02, 2015
- Merge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into dev · 43479685
  Shaman Narayanasamy authored 9 years ago
  
  43479685
- Add exception for preprocessed fastqc analysis · 90adbf59
  Shaman Narayanasamy authored 9 years ago
  
  90adbf59
Sep 01, 2015
- Output name change · 7622c38e
  Shaman Narayanasamy authored 9 years ago
  
  7622c38e
- Adjustments to R script · f427b739
  Shaman Narayanasamy authored 9 years ago
  
  f427b739
- Merge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into dev · 576cf97f
  Shaman Narayanasamy authored 9 years ago
  
  576cf97f
Aug 30, 2015
- Correction · 5f32d514
  Shaman Narayanasamy authored 9 years ago
  
  5f32d514
Aug 29, 2015
- Handle empty single end read files for fastqc · 11efe5ed
  Shaman Narayanasamy authored 9 years ago
  
  11efe5ed
- Further cleaning up of R script · 6d50eead
  Shaman Narayanasamy authored 9 years ago
  
  6d50eead
- Clean up R script, new plot, new function · d56e7a26
  Shaman Narayanasamy authored 9 years ago
  
  d56e7a26
- Edit quast rule and heavy mods to R script-untested · 28a4dc0f
  Shaman Narayanasamy authored 9 years ago
  
  28a4dc0f
Aug 28, 2015
- divide docker image · e2105639
  Yohan Jarosz authored 9 years ago
  
  e2105639
- Small change in report · d38bea3c
  Shaman Narayanasamy authored 9 years ago
  
  d38bea3c
Aug 27, 2015
- arrange report · fb7fc422
  Yohan Jarosz authored 9 years ago
  
  fb7fc422