Commits · b24381e173a592c7e0d8ebdfb59a7e58ea482084 · IMP-dev / IMP

Oct 29, 2015
- typo · b24381e1
  Yohan Jarosz authored 9 years ago
  
  b24381e1
- Set Default version · d3cdfd8b
  Yohan Jarosz authored 9 years ago
  
  d3cdfd8b
- add code to ship IMP codebase inside the container · 6a59a63e
  Yohan Jarosz authored 9 years ago
  
  6a59a63e
- Document config file parameters · 7fbcc52e
  Yohan Jarosz authored 9 years ago
  
  7fbcc52e
- Mount the current IMP codebase via --current option · 7b72d74e
  Yohan Jarosz authored 9 years ago
  
  7b72d74e
- add doc for usage · 2b4417ae
  Yohan Jarosz authored 9 years ago
  
  2b4417ae
- rm git hash from IMP version information · c16e2e96
  Yohan Jarosz authored 9 years ago
  
  c16e2e96
Oct 27, 2015
- Change variant call rules · bc9f29a7
  Shaman Narayanasamy authored 9 years ago
  
  bc9f29a7
Oct 23, 2015
- add doc for parameters · dbeb8c91
  Yohan Jarosz authored 9 years ago
  
  dbeb8c91
- add readme + docs · edebe63e
  Yohan Jarosz authored 9 years ago
  
  edebe63e
- rm some comments + fix PEP8 · 3d5bd437
  Yohan Jarosz authored 9 years ago
  
  3d5bd437
- delete README for docker compose · 2e687c4e
  Yohan Jarosz authored 9 years ago
  
  2e687c4e
- change CL · 4a5a1ea4
  Yohan Jarosz authored 9 years ago
  
  4a5a1ea4
- change path of snakemake config file and init · 1ea749ea
  Yohan Jarosz authored 9 years ago
  
  1ea749ea
Oct 14, 2015
- Comment out VCF merging step since it is taking too damn long · 5f1bb06d
  Shaman Narayanasamy authored 9 years ago
  
  5f1bb06d
Oct 13, 2015
- Merge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into dev · 2760564e
  Shaman Narayanasamy authored 9 years ago
  
  2760564e
- Handle exceptions in R script; Robustification · 72cbd15e
  Shaman Narayanasamy authored 9 years ago
  
  72cbd15e
Oct 10, 2015
- Small comment change · d1374034
  Shaman Narayanasamy authored 9 years ago
  
  d1374034
Oct 09, 2015
- Ignore last added file · 80dfedb9
  Shaman Narayanasamy authored 9 years ago
  
  80dfedb9
- Add instructions to upload container · e28ad91b
  Shaman Narayanasamy authored 9 years ago
  
  e28ad91b
- add readme to build a tarball · d2f8c2aa
  Yohan Jarosz authored 9 years ago
  
  d2f8c2aa
Oct 08, 2015
- Fix bug in R plotting script · 3fa64749
  Shaman Narayanasamy authored 9 years ago
  
  3fa64749
Oct 07, 2015
- Bug fix in R readGff function · ec3b4852
  Shaman Narayanasamy authored 9 years ago
  
  ec3b4852
Oct 02, 2015
- Changed prokka setting to include rRNA annotation · fee9e6f8
  Shaman Narayanasamy authored 9 years ago
  
  fee9e6f8
- R scripts saves data incrementally · 20be7b1d
  Shaman Narayanasamy authored 9 years ago
  
  20be7b1d
- Renaming of analysis steps · 1116d233
  Shaman Narayanasamy authored 9 years ago
  
  1116d233
- Changed names and streamlined rules · 0b2734b9
  Shaman Narayanasamy authored 9 years ago
  
  0b2734b9
Oct 01, 2015
- bug fix · 3f10daa0
  Yohan Jarosz authored 9 years ago
  
  3f10daa0
- migrating back assembly · 1df5ee30
  Yohan Jarosz authored 9 years ago
  
  1df5ee30
- adding files · b43b1185
  Yohan Jarosz authored 9 years ago
  
  b43b1185
- rename files · 9eaed686
  Yohan Jarosz authored 9 years ago
  
  9eaed686
- add missing files · 91c63690
  Yohan Jarosz authored 9 years ago
  
  91c63690
- importting different assembler · 8f6a6065
  Yohan Jarosz authored 9 years ago
  
  8f6a6065
- Merge branch 'dev' into dev_megahit · ccad5ee1
  Shaman Narayanasamy authored 9 years ago
  
  ccad5ee1
Sep 30, 2015
- update IMP version · f81afb72
  Yohan Jarosz authored 9 years ago
  
  f81afb72
Sep 29, 2015
- Megahit assembly working · c510832e
  Shaman Narayanasamy authored 9 years ago
  
  c510832e
- Correct MGMT assembly input · 53ddd62d
  Shaman Narayanasamy authored 9 years ago
  
  53ddd62d
- Migrate assembly to megahit · e75a917f
  Shaman Narayanasamy authored 9 years ago
  
  e75a917f
- Fix cap3 assembly · 405234b2
  Shaman Narayanasamy authored 9 years ago
  
  405234b2
- Comment out MEGAHIT assembly · 530e6812
  Shaman Narayanasamy authored 9 years ago
  
  530e6812