Commits · e2bd927f6362ad8a64cfaab1380b3919a0b62eb1 · IMP / IMP3 · GitLab

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Feb 24, 2022
- merge issue22 and mantis into master · e2bd927f
  Anna Heintz Buschart authored 3 years ago
  
  e2bd927f
- include installation in wrapper · dc9f739d
  Anna Heintz Buschart authored 3 years ago
  
  dc9f739d
- include installation in wrapper · f0cd77b0
  Anna Heintz Buschart authored 3 years ago
  
  f0cd77b0
- feature counts and downstream analysis for mantis, submission to core-binding cluster · 63f3e62e
  Anna Heintz Buschart authored 3 years ago
  
  63f3e62e
Feb 07, 2022
- synch config names with install names, update fasta environment, change mantis... · 94298c4f
  Anna Heintz Buschart authored 3 years ago
  
  synch config names with install names, update fasta environment, change mantis command to conda mantis
  94298c4f
Feb 03, 2022
- testing mantis install · c7dd2d5e
  Anna Heintz Buschart authored 3 years ago
  
  c7dd2d5e
Feb 02, 2022
- conflicting note · 6ae6c05e
  Anna Heintz Buschart authored 3 years ago
  
  6ae6c05e
- conflicting note · cc187db0
  Anna Heintz Buschart authored 3 years ago
  
  cc187db0
- configs · e6ec3c90
  Anna Heintz Buschart authored 3 years ago
  
  e6ec3c90
- mantis: minor change in mantis_gff.py and comments in mantis.smk (issue #15 ) [ci skip] · 56d4fc0c
  Valentina Galata authored 3 years ago
  
  56d4fc0c
Dec 20, 2021
- Update installation.rst with conda directory · 6c8652e8
  Anna Buschart authored 3 years ago
  
  6c8652e8
Dec 15, 2021
- mantis: split rules into mult files; GFF script; updated rules (issue #15 ) [ci skip] · fe289c0e
  Valentina Galata authored 3 years ago
  
  fe289c0e
- mantis: corrected main config (mantis paths, issue #15 ) [ci skip] · 2e8fccc3
  Valentina Galata authored 3 years ago
  
  2e8fccc3
Dec 09, 2021
- installation: mv mantis config rule to main workflow (issue #22 , #15 ) [skip ci] · c66e0fd4
  Valentina Galata authored 3 years ago
  
  c66e0fd4
- installation: updated mantis rule (check_sql), bug fix in mantis config (issue #22 ) [skip ci] · f0ef9f13
  Valentina Galata authored 3 years ago
  
  f0ef9f13
- installation: updated docs (installation, not finished; issue #22 ) [skip ci] · 51e2cb9c
  Valentina Galata authored 3 years ago
  
  51e2cb9c
- overhaul: updated docs: main requirements (issue #39 ) [ci skip] · 32311de6
  Valentina Galata authored 3 years ago
  
  32311de6
- overhaul: updated main requirements yaml (issue #39 ) [ci skip] · 03cdf9cb
  Valentina Galata authored 3 years ago
  
  03cdf9cb
- overhaul: mv main requirements yaml (issue #39 ) [ci skip] · ed75e8c0
  Valentina Galata authored 3 years ago
  
  ed75e8c0
Dec 08, 2021
- installation: download_and_decompress.py: minor changes and improvements (issue #22 ) [skip ci] · aa378b81
  Valentina Galata authored 3 years ago
  
  aa378b81
- installation: updated readme (issue #22 ) [skip ci] · 0c4d4f5b
  Valentina Galata authored 3 years ago
  
  0c4d4f5b
- installation: changed/added threads in some rules (issue #22 ) [skip ci] · 7a795793
  Valentina Galata authored 3 years ago
  
  7a795793
- mantis: added submodule from github (issue #15 ) [ci skip] · bfaeed45
  Valentina Galata authored 3 years ago
  
  bfaeed45
- mantis: rm submodule (to be replaced, issue #15 ) [ci skip] · 1c1317a2
  Valentina Galata authored 3 years ago
  
  1c1317a2
- mantis: updated mantis rules (issue #15 ) [ci skip] · 9f9aa3a6
  Valentina Galata authored 3 years ago
  
  9f9aa3a6
- mantis: updated mantis conda yaml (issue #15 ) [ci skip] · 497f13bc
  Valentina Galata authored 3 years ago
  
  497f13bc
- mantis: updated main config (issue #15 ) [ci skip] · f1455bab
  Valentina Galata authored 3 years ago
  
  f1455bab
- mantis: renamed and updated mantis conda yaml (issue #15 ) [ci skip] · fad4cf0a
  Valentina Galata authored 3 years ago
  
  fad4cf0a
- mantis: updated branch (merged with b6f9da0e , issue #15 ) [ci skip] · d0444f75
  Valentina Galata authored 3 years ago
  
  d0444f75
- installation: mantis: added cores param for setup (issue #22 ) [skip ci] · 488b2946
  Valentina Galata authored 3 years ago
  
  488b2946
- installation: updated readme (issue #22 ) [skip ci] · 24b1b2a0
  Valentina Galata authored 3 years ago
  
  24b1b2a0
- installation: added mantis; minor changes in other files (issue #22 ) [skip ci] · ab8c81d0
  Valentina Galata authored 3 years ago
  
  ab8c81d0
Dec 07, 2021
- installation: minor correction in envs/utils.yaml (issue #22 ) [skip ci] · 2e283057
  Valentina Galata authored 3 years ago
  
  2e283057
- installation: major changes: script for download/decompression; simplified... · d5d9ed61
  Valentina Galata authored 3 years ago
  
  installation: major changes: script for download/decompression; simplified config and workflow (issue #22) [skip ci]
  d5d9ed61
Nov 18, 2021
- installation: smk workflow w/o hmms and mantis (issue #22 ) [skip ci] · e5e43452
  Valentina Galata authored 3 years ago
  
  e5e43452
Sep 13, 2021
- Merge branch 'issue34' into 'master' · b6f9da0e
  Anna Buschart authored 3 years ago
  
  Issue34 See merge request !8
  b6f9da0e
- Issue34 · 9399a1c4
  Valentina Galata authored 3 years ago and Anna Buschart committed 3 years ago
  
  9399a1c4
Sep 10, 2021
- Merge branch 'issue37' into 'master' · 6fbab9f3
  Anna Buschart authored 3 years ago
  
  Issue37 See merge request !7
  6fbab9f3
- Update filtering.smk: don't overwrite log · 9e829c0c
  Anna Buschart authored 3 years ago
  
  9e829c0c
Sep 01, 2021
- Merge branch 'issue30' into 'master' · c84a0fee
  Valentina Galata authored 3 years ago
  
  Issue30: adding GitLab issue templates See merge request !11
  c84a0fee