- Aug 06, 2010
- Aug 05, 2010
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Aaron authored
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- Aug 04, 2010
- Jul 26, 2010
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Aaron authored
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- Jul 23, 2010
- Jul 22, 2010
- Jul 21, 2010
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Aaron authored
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- Jul 18, 2010
- Jul 17, 2010
- Jul 15, 2010
- Jul 06, 2010
- Jul 05, 2010
- Jul 04, 2010
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Aaron authored
Fixed bug in groupBy and added logic to enforce that strings are numeric when asking for nueric ops.
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Aaron authored
A. Fixed massive bug in parseBedLine that disallowed BED features with start = 0. Bad news. 1. Moved ToString to lineFileUtilities 2. Added tabFile class. Works with gzip as well. 3. Changed groupBy to use the new TabFile class. 4. Added new collapse feature to groupBy.
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Aaron authored
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Aaron authored
1. Fixed bug in BamAncillary::getBamBlocks where the switch statement was misbehaving. Changed to if/else 2. Added countSplitHits to bedFile class to proper count coverage from "blocked" alignments. Previously, coverage was counted separately for __each__ block yet what we actually want is the base coverage to be counted for each block, but we only want the blocks to be treated as __one__ alignment or feature. 3. Updated coverageBed to use getBamBlocks.
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- Jul 01, 2010
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Aaron authored
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