merge review

2021/2021-04-20_IT101-DM/slides/data-housekeeping.md

@@ -73,6 +73,13 @@ From Jenny Bryan by CC-BY
 * Separate files you are actively working from the old ones  
 * Orient newcomers to the group's conventions
 
+<div style="position:absolute;left:43%;top:10%">
+<img src="slides/img/folder_structure.png" height="700px">
+</div>
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href="https://riojournal.com/article/56508/" style="color:grey; font-size:0.8em;">Foundational Practices of Research Data Management</a>
+</div>
+
 
 
 # Data housekeeping

2021/2021-04-20_IT101-DM/slides/ingestion.md

@@ -4,50 +4,34 @@
 <img src="slides/img/LCSB_storages_full.png" height="750px">
 </div>
 
-<div class='fragment' style="position:absolute">
+<div class='fragment' style="position:relative">
 <img src="slides/img/LCSB_storages_personal-crossed.png" height="750px">
-</div>
-
-<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
-<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
-</div>
-
-
-
-# Data ingestion/transfer
-## Receiving and sending data 
 
-<img height="400px" style="position:relative;left:10%" src="slides/img/banned_exchange_channels.png"><br>
-<div style="position:absolute; left:10%;width:30%">
+<div style="position:absolute;left:65%;top:60%">
 
-## E-mail is not for data transfer
-
-* Avoid transfer of any data by e-mail
-* E-mail is a poor repository
-* Data can be read on passage
+* Unless consortium/project has formally agreed to use a secure commercial cloud
 
 </div>
-<div class="fragment" style="left:50%; width:30%; position:absolute">
 
-## Exchanging data
-* Share on Atlas server
-* OwnCloud share (LCSB - BioCore)
-* DropIt service (SIU)
-* LFT (IBM Aspera) share for sensitive data
-</div>
 </div>
 
 <div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
-<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-05" style="color:grey; font-size:0.8em;">Research Human Data Sharing Policy</a>
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
 </div>
 
 
 
-# Data ingestion/transfer
+
+# Data ingestion: Transfer and Integrity
+  * When sending data: <font color="red">Do not use emails, use secure platforms (Cloud, Aspera, Atlas share...)!</font>
+
+<div class="fragment">
 Data can be corrupted:
+
   * (non-)malicious modification
   * faulty file transfer
   * disk corruption
+</div>
   
 <div class="fragment">
 
@@ -55,8 +39,8 @@ Data can be corrupted:
 
  * disable write access to the source data
  * generate checksums!
-
-<div style="position:absolute;left:40%">
+ 
+<div style="position:absolute;left:40%;top:30%">
 <img src="slides/img/checksum.png" width="500px">
 </div>
 </div>
@@ -77,3 +61,33 @@ Data can be corrupted:
 <div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
 <a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
 </div>
+
+
+
+# Data ingestion/Integrity
+## Encryption
+<div class='fragment' style="position:relative;left:25%;top:60%">
+<img  align="middle" height="300px" src="slides/img/encryption.png">
+</div>
+<div class='fragment'>
+
+* Sensitive data protected by encryption
+</div>
+<div class='fragment'>
+
+* Guaranted confidentiality
+</div>
+<div class='fragment'>
+
+* Encryption key which need to be kept safe
+</div>
+<div class='fragment'>
+
+* <font color= red>Loosing your encryption key means loosing your data!</font>
+</div>
+<div class='fragment'>
+
+* Make a off-site backup of your data
+</div>
+
+

2021/2021-04-20_IT101-DM/slides/introduction.md

@@ -24,3 +24,5 @@ Prof. Dr. Rudi Balling, director
    * Technicians
    * Administrators
 </div>
+
+

2021/2021-04-20_IT101-DM/slides/list.json

 [
-    {"filename": "index.md"},
-    {"filename": "introduction.md"},
-    {"filename": "data-introduction.md"},
-    {"filename": "data_flow.md"},
-    {"filename": "ingestion.md"},
-    {"filename": "storage_setup.md"},
-    {"filename": "data-housekeeping.md"},
-    {"filename": "howtos.md"},
-    {"filename": "reproducibility.md"},
-    {"filename": "code_versioning.md"},
-    {"filename": "visualization.md"},
-    {"filename": "problem_solving.md"},
-    {"filename": "fair-principles.md"},
-    {"filename": "r3_group.md"},
-    {"filename": "thanks.md"}
-]
+    { "filename": "index.md" },
+    { "filename": "introduction.md" },
+    { "filename": "access_management.md" },
+    { "filename": "data-introduction.md" },
+    { "filename": "data_flow.md" },
+    { "filename": "ingestion.md" },
+    { "filename": "storage_setup.md" },
+    { "filename": "data-housekeeping.md" },
+    { "filename": "howtos.md" },
+    { "filename": "reproducibility.md" },
+    { "filename": "code_versioning.md" },
+    { "filename": "visualization.md" },
+    { "filename": "data_life_cycle.md" },
+    { "filename": "problem_solving.md" },
+    { "filename": "fair-principles.md" },
+    { "filename": "r3_group.md" },
+    { "filename": "thanks.md" }
+]
\ No newline at end of file

2021/2021-04-20_IT101-DM/slides/reproducibility.md

@@ -94,3 +94,4 @@
 <img src="slides/img/red-cross.png" width="700px"><br>
 </div>
 </div>
+

2021/2021-04-20_IT101-DM/slides/storage_setup.md

@@ -4,12 +4,8 @@
 * Regularly update your SW/OS
 * Encrypt movable media
 
-### Passwords
 
-* Strong passwords
-* Password manager
-* Safe password exchange channels
-* Expiration time on password share
+<div class="fragment" >
 
 ### Backup
   * take care of your own backups!
@@ -24,6 +20,35 @@
 <a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
 </div>
 
+</div>
+
+<div class="fragment">
+
+### Passwords
+
+* Strong passwords
+* Password manager
+* Safe password exchange channels
+* Expiration time on password share
+</div>
+
+
+
+# Storage set-up
+## Password exchange channels
+<div style="position:relative">
+<img src="slides/img/privateBin.png" height="350px">
+</div>
+<div style="position:absolute;left:65%;top:85%">
+
+
+* Free service provided by LSCB at <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> 
+* **LUMS** account is required
+* Set expiry period
+* Can expire upon first access
+* Password only accessible by sender and recipient
+</div>
+
 
 
 # Storage set-up

2021/2021-07-27_IT101-DM/slides/access_management.md

@@ -27,7 +27,7 @@
 <div class="fragment">  
 
     * Owncloud: <a href="http://owncloud.lcsb.uni.lu" style="color:blue; font-size:0.8em;">owncloud.lcsb.uni.lu</a>
-    * R3 Gitlab: <a href="https://git-r3lab.uni.lu" style="color:blue; font-size:0.8em;">git-r3lab.uni.lu</a>
+    * R3 Gitlab: <a href="https://gitlab.lcsb.uni.lu" style="color:blue; font-size:0.8em;">gitlab.lcsb.uni.lu</a>
     * Private Bin: <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> 
     * LCSB Wiki page, Webdav, LCSB Analytics page
 

2021/2021-07-27_IT101-DM/slides/r3_group.md

@@ -81,7 +81,7 @@ Clinic - hands-on, meetings in groups, code review + suggestions<br>
 </div>
 <div class="profile-container">
 
-  * Valentine Groues</li>
+  * Valentin </li>
   * <img src="slides/img/R3_profile_pictures/valentine_groues.png">
   * Development