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Commit f3ba0b64 authored by Piotr Gawron's avatar Piotr Gawron
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debug added

parent e17cf7f9
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2 merge requests!630WIP: Resolve "The privileges of a new user are not saved in some cases",!386Resolve "Continous integration tests"
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......@@ -294,18 +294,24 @@ public class MiRNAParser extends CachableInterface implements IExternalService {
}
Map<String, MiRNA> miRNAs = new HashMap<>();
List<MiRNA> result = new ArrayList<MiRNA>();
List<MiRNA> result = new ArrayList<>();
NPOIFSFileSystem fileInputStream = null;
try {
fileInputStream = new NPOIFSFileSystem(getSourceInputStream());
logger.debug("debug 1");
Workbook workbook = WorkbookFactory.create(fileInputStream);
logger.debug("debug 2");
Sheet sheet = workbook.getSheetAt(0);
logger.debug("debug 3");
Iterator<Row> rows = sheet.rowIterator();
// Skip header
if (rows.hasNext()) {
rows.next();
}
logger.debug("debug 4");
int counter = 0;
while (rows.hasNext()) {
logger.debug("next row"+ (counter++));
Row row = rows.next();
Cell targetSpeciesCell = row.getCell(SPECIES_COL, Row.RETURN_BLANK_AS_NULL);
MiriamData organism = null;
......
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