Resolve "Overlapping compartments in non-layout SBML upload"

See merge request !689

Resolve "Align the boxes in right top corner of map"

See merge request !688

hideProcessing wasn't called in the right places

See merge request !687

Resolve "Publication list does not provide correct hyperlinks for invalid PubMed"

See merge request !686

fetching information about publication with invalid (non numeric) pubmed id triggered exception

See merge request !685

hopefully the last time I fix Safari jQuery icons

See merge request !683

Resolve "For an archived map the default overlay is Empty"

See merge request !675

call StartupBean.init after DI via @PostConstruct

See merge request !674

listener for removal confirmation is added on object creation not refresh

See merge request !673

Resolve "Compartment annotation"

See merge request !672

compartment is properly resolved when bigger compartment is located in smaller compartment, but click is done on border of the bigger element

Pathway uses different type name. Moreover when parent of element is a pathway it's name is pathway (not a hardcoded compartment type)

add_PROJECT privilege changed to MANAGE_PROJECT privilege when checking if user…

See merge request !671

add_PROJECT privilege changed to MANAGE_PROJECT privilege when checking if user can edit/remove project

second call on remove all listeners doesn't show a warning

See merge request !670

html nodes are removed from dom when plugin is removed

See merge request !669

default privileges are available for everyone

See merge request !667

Resolve "logout problem"

See merge request !668