Commits · 7dabd798fe7874baf983e63138d98583c18a02db · minerva / core

Jun 26, 2017
- AnnotatedObject renamed to BioEntity · d09f5464
  Piotr Gawron authored 7 years ago
  
  d09f5464
Jun 20, 2017
- export to xml improved (additional field data added) · 37b3208f
  Piotr Gawron authored 7 years ago
  
  37b3208f
- export to cell designer contains compartment notes · f8a7ea7e
  Piotr Gawron authored 7 years ago
  
  f8a7ea7e
- parsing of compartment notes added · 8bf97b9b
  Piotr Gawron authored 7 years ago
  
  8bf97b9b
Jun 16, 2017
- java doc · f7369650
  Piotr Gawron authored 7 years ago
  
  f7369650
- semantic zooming generator added · c97a2cc5
  Piotr Gawron authored 7 years ago
  
  c97a2cc5
- drawing of reactions for semantic zooming · 02301223
  Piotr Gawron authored 7 years ago
  
  02301223
Jun 09, 2017
- missing methods added · e3964d10
  Piotr Gawron authored 7 years ago
  
  e3964d10
Jan 16, 2017
- api for drug targets · 72d73186
  Piotr Gawron authored 8 years ago
  
  72d73186
Dec 28, 2016
- when exporting to cell designer elements are distinguishe also by · 11abc97e
  Piotr Gawron authored 8 years ago
  
  homodimer
  11abc97e
- debug test removed · 1081679a
  Piotr Gawron authored 8 years ago
  
  1081679a
- export to CellDesigner fixed · 6559453d
  Piotr Gawron authored 8 years ago
  
  6559453d
Dec 16, 2016

fix on some issues with celldeigner export · 596886ed

Piotr Gawron authored 8 years ago

when exporting celldesigner reaction info about complex and species must
be provded in very specific way

596886ed

Dec 15, 2016
- issue #76 · bb0635b5
  Piotr Gawron authored 8 years ago
  
  export to celldesigner returns proper cell designer file
  bb0635b5
Oct 27, 2016
- unimportant getter removed · 71c5527c
  Piotr Gawron authored 8 years ago
  
  71c5527c
- issue #10 - sbgn format moved from model to project · cff9d812
  Piotr Gawron authored 8 years ago
  
  cff9d812
- model warnings moved to project (issue #9 ) · 24d6947d
  Piotr Gawron authored 8 years ago
  
  24d6947d
Oct 08, 2016
- test coverage of cell designer parser · c4cc5207
  piotr.gawron authored 8 years ago
  
  c4cc5207
Oct 07, 2016
- fix on hierarchical algorithm and compartments · 1312cc34
  piotr.gawron authored 8 years ago
  
  1312cc34
- missing javadocs · 61428ff1
  piotr.gawron authored 8 years ago
  
  61428ff1
Oct 06, 2016
- Element.parent property removed · a9e3fb40
  piotr.gawron authored 8 years ago
  
  a9e3fb40
- test coverage for cell designer parser · f55f1294
  piotr.gawron authored 8 years ago
  
  f55f1294
- fix on tests · 1fd9d3e0
  piotr.gawron authored 8 years ago
  
  1fd9d3e0
Oct 05, 2016
- renaming of model structures + javadoc update · ec4e94be
  piotr.gawron authored 8 years ago
  
  ec4e94be
- model javadoc added and structure refactoried · f8f4a66f
  piotr.gawron authored 8 years ago
  
  f8f4a66f
Oct 04, 2016
- polishing distinction betwen model and celldesigner parser · a18fbfa6
  piotr.gawron authored 8 years ago
  
  a18fbfa6
Oct 03, 2016
- base refactoring finsihed · cd8d1eb1
  piotr.gawron authored 8 years ago
  
  classes renamed to species (there are no aliases anymore) database data about annotators cleared
  cd8d1eb1
- old CD structures don't refer to db anymore · ad998297
  piotr.gawron authored 8 years ago
  
  ad998297
- model and db refactoried, almost all test pass · 6db1fa6f
  piotr.gawron authored 8 years ago
  
  6db1fa6f
Oct 01, 2016
- all clases compile · e367d4be
  piotr.gawron authored 8 years ago
  
  e367d4be
Sep 30, 2016
- cell designer structures moved to celldesigner module, in progress · d357d2b2
  piotr.gawron authored 8 years ago
  
  d357d2b2
Sep 29, 2016
- refactoring of db connection in progress · 820dbb0a
  piotr.gawron authored 8 years ago
  
  820dbb0a
- most of pathvisio tests fixed · 7716024d
  piotr.gawron authored 8 years ago
  
  7716024d
- refactoring · acd025b3
  piotr.gawron authored 8 years ago
  
  command tests fixed, converter tests fixed and some pathvisio tests fixed
  acd025b3
Sep 28, 2016

partial working new model: · af954491

piotr.gawron authored 8 years ago

model refactoried, celldesigner parser passes tests

the rest stil to be done

af954491

Sep 26, 2016
- whitespace characters · 2e02f011
  piotr.gawron authored 8 years ago
  
  2e02f011
- temp commit - species alias is abstract and there are specific alias · 0eff3a99
  piotr.gawron authored 8 years ago
  
  classes for all species
  0eff3a99
Sep 23, 2016

temp commit · 3a1b80c5

piotr.gawron authored 8 years ago

SpeciesAlias implements AnnotatedObject and Element doesn't
most of the tests pass

3a1b80c5

Sep 20, 2016
- new lines issue · 998c0537
  piotr.gawron authored 8 years ago
  
  998c0537
Sep 16, 2016
- tests added for pubmed parser · 8a9ea56d
  piotr.gawron authored 8 years ago
  
  8a9ea56d