Resolve "import of serology data"

Closes #335 (closed), #336 (closed)

smash/web/models/mail_template.py

@@ -39,6 +39,13 @@ def get_formatted_time(time_format):
     return now.strftime(time_format).decode(date_format_encoding())
 
 
+def date_to_str(date, format):
+    if date is not None:
+        return date.strftime(format).decode(date_format_encoding())
+    else:
+        return ""
+
+
 class MailTemplate(models.Model):
     MAILS_TEMPLATE_GENERIC_TAGS = [
         ("##DATE_FULL##", "Current date when the mail will be generated (long format)",
@@ -74,6 +81,36 @@ class MailTemplate(models.Model):
         ("##S_MPOWER_ID##", "Subject's mPower identifier", ""),
         ("##S_ND_NUMBER##", "Subject's ND number", ""),
         ("##S_DATE_ADDED##", "Subject's date of creation", get_formatted_time(DATE_FORMAT_SHORT)),
+
+        ("##VIRUS_1_SAMPLE_COLLECTION_DATE##", "Virus test collection date in visit 1",
+         get_formatted_time(DATE_FORMAT_SHORT)),
+        ("##VIRUS_2_SAMPLE_COLLECTION_DATE##", "Virus test collection date in visit 2",
+         get_formatted_time(DATE_FORMAT_SHORT)),
+        ("##VIRUS_3_SAMPLE_COLLECTION_DATE##", "Virus test collection date in visit 3",
+         get_formatted_time(DATE_FORMAT_SHORT)),
+        ("##VIRUS_4_SAMPLE_COLLECTION_DATE##", "Virus test collection date in visit 4",
+         get_formatted_time(DATE_FORMAT_SHORT)),
+        ("##VIRUS_5_SAMPLE_COLLECTION_DATE##", "Virus test collection date in visit 5",
+         get_formatted_time(DATE_FORMAT_SHORT)),
+
+        ("##VIRUS_1_RESULT##", "Virus test results in visit 1", "Positive"),
+        ("##VIRUS_2_RESULT##", "Virus test results in visit 2", "Negative"),
+        ("##VIRUS_3_RESULT##", "Virus test results in visit 3", "Inconclusive"),
+        ("##VIRUS_4_RESULT##", "Virus test results in visit 4", ""),
+        ("##VIRUS_5_RESULT##", "Virus test results in visit 5", ""),
+
+        ("##VIRUS_1_IGA_STATUS##", "IgA Status in visit 1", "Positive"),
+        ("##VIRUS_2_IGA_STATUS##", "IgA Status in visit 2", "Negative"),
+        ("##VIRUS_3_IGA_STATUS##", "IgA Status in visit 3", "Borderline"),
+        ("##VIRUS_4_IGA_STATUS##", "IgA Status in visit 4", ""),
+        ("##VIRUS_5_IGA_STATUS##", "IgA Status in visit 5", ""),
+
+        ("##VIRUS_1_IGG_STATUS##", "IgG Status in visit 1", "Positive"),
+        ("##VIRUS_2_IGG_STATUS##", "IgG Status in visit 2", "Negative"),
+        ("##VIRUS_3_IGG_STATUS##", "IgG Status in visit 3", "Borderline"),
+        ("##VIRUS_4_IGG_STATUS##", "IgG Status in visit 4", ""),
+        ("##VIRUS_5_IGG_STATUS##", "IgG Status in visit 5", ""),
+
     ]
 
     MAILS_TEMPLATE_VISIT_TAGS = [
@@ -257,12 +294,10 @@ class MailTemplate(models.Model):
 
     @staticmethod
     def get_subject_replacements(study_subject):
+        result = {}
         if study_subject is not None:
-            if study_subject.subject.date_born is not None:
-                date_born = study_subject.subject.date_born.strftime(DATE_FORMAT_SHORT).decode(date_format_encoding())
-            else:
-                date_born = ""
-            return {
+            date_born = date_to_str(study_subject.subject.date_born, DATE_FORMAT_SHORT)
+            result = {
                 "##S_FULL_NAME##": unicode(study_subject),
                 "##S_FIRST_NAME##": study_subject.subject.first_name,
                 "##S_LAST_NAME##": study_subject.subject.last_name,
@@ -270,7 +305,7 @@ class MailTemplate(models.Model):
                 "##S_CITY##": study_subject.subject.city,
                 "##S_COUNTRY##": unicode(study_subject.subject.country),
                 "##S_DIAGNOSIS_YEAR##": str(study_subject.year_of_diagnosis),
-                "##S_DATE_ADDED##": study_subject.date_added.strftime(DATE_FORMAT_SHORT).decode(date_format_encoding()),
+                "##S_DATE_ADDED##": date_to_str(study_subject.date_added, DATE_FORMAT_SHORT),
                 "##S_DATE_BORN##": date_born,
                 "##S_DIAGNOSIS##": unicode(study_subject.diagnosis),
                 "##S_EMAIL##": unicode(study_subject.subject.email),
@@ -286,7 +321,39 @@ class MailTemplate(models.Model):
                 '##S_MAIL_LANGUAGE##': str(study_subject.subject.default_written_communication_language),
                 '##S_KNOWN_LANGUAGES##': ", ".join([l.name for l in study_subject.subject.languages.all()])
             }
-        return {}
+            for i in range(1, 6):
+                virus_test_field = "##VIRUS_{}_RESULT##".format(i)
+                virus_test_value = virus_test_to_str(getattr(study_subject, "virus_test_{}".format(i)),
+                                                     getattr(study_subject, "virus_test_{}_updated".format(i)))
+
+                virus_test_date_field = "##VIRUS_{}_SAMPLE_COLLECTION_DATE##".format(i)
+                virus_test_date_value = date_to_str(getattr(study_subject, "virus_test_{}_collection_date".format(i)),
+                                                    DATE_FORMAT_SHORT)
+
+                virus_iga_status_field = "##VIRUS_{}_IGA_STATUS##".format(i)
+                virus_iga_status_value = getattr(study_subject, "virus_test_{}_iga_status".format(i))
+                if virus_iga_status_value is None:
+                    virus_iga_status_value = ""
+
+                virus_igg_status_field = "##VIRUS_{}_IGG_STATUS##".format(i)
+                virus_igg_status_value = getattr(study_subject, "virus_test_{}_igg_status".format(i))
+                if virus_igg_status_value is None:
+                    virus_igg_status_value = ""
+
+                if virus_test_date_value != "":
+                    if virus_test_value == "":
+                        virus_test_value = "N/A"
+                    if virus_iga_status_value == "":
+                        virus_iga_status_value = "N/A"
+                    if virus_igg_status_value == "":
+                        virus_igg_status_value = "N/A"
+
+                result[virus_test_field] = virus_test_value
+                result[virus_test_date_field] = virus_test_date_value
+                result[virus_iga_status_field] = virus_iga_status_value
+                result[virus_igg_status_field] = virus_igg_status_value
+
+        return result
 
     @staticmethod
     def get_voucher_replacements(voucher):
@@ -310,3 +377,14 @@ class MailTemplate(models.Model):
                 "##C_HOURS##": str(voucher.hours),
             }
         return {}
+
+
+def virus_test_to_str(test, date):
+    if test is None and date is not None:
+        return "Inconclusive"
+    if test is None:
+        return ""
+    if test:
+        return "Positive"
+    else:
+        return "Negative"