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test/intersect/multi_intersect
test/intersect/sortAndNaming
test/intersect/a.bam
test/intersect/a.bed
test/intersect/aVSb.bam
test/intersect/aWithHeaderVsB.txt
test/intersect/a_bgzipped.bed.gz
test/intersect/a_gzipped.bed.gz
test/intersect/a_testZeroLen.bed
test/intersect/a_vcfSVtest.vcf
test/intersect/a_withLargeHeader.bed
test/intersect/a_withLargeHeader_bgzipped.bed.gz
test/intersect/a_withLargeHeader_gzipped.bed.gz
test/intersect/a_with_bothUnmapped.bam
test/intersect/b.bed
test/intersect/b_testZeroLen.bed
test/intersect/b_vcfSVtest.vcf
test/intersect/bed3.bed
test/intersect/bed4.bed
test/intersect/bed5.bed
test/intersect/bed6.bed
test/intersect/bed6.strand.bed
test/intersect/bed6.strand2.bed
test/intersect/bedplus.bed
test/intersect/bug150_a.bed
test/intersect/bug150_b.bed
test/intersect/bug167_strandSweep.bed
test/intersect/bug187_a.bed
test/intersect/bug187_b.bed
test/intersect/bug223_sv1_a.vcf
test/intersect/bug223_sv1_b.vcf
test/intersect/c.bed
test/intersect/chromOrderA.bed
test/intersect/chromOrderB.bed
test/intersect/chromsOutOfOrder.bed
test/intersect/d.bed
test/intersect/dosLineCharWithExtraTab_b.bed
test/intersect/dosLineChar_a.bed
test/intersect/gdc.bam
test/intersect/gdc.gff
test/intersect/gdc_exp
test/intersect/gdc_one.bed
test/intersect/headerOnly.vcf
test/intersect/human.hg19.genome
test/intersect/human.hg19.vSort.genome
test/intersect/j1.bed
test/intersect/mapped_and_unmapped.sam
test/intersect/new_test-intersect.sh
test/intersect/new_test-intersect.sh~
test/intersect/nonamecheck_a.bed
test/intersect/nonamecheck_b.bed
test/intersect/oneRecordNoNewline.bed
test/intersect/oneUnmapped.bam
test/intersect/one_block.sam
test/intersect/performanceTest.sh
test/intersect/queryUnmappedMateMappedCoordsInvalid.bam
test/intersect/recordsOutOfOrder.bed
test/intersect/splitBug155_a.bed
test/intersect/splitBug155_b.bed
test/intersect/test-intersect.sh
test/intersect/three_blocks.sam
test/intersect/three_blocks_match.bam
test/intersect/three_blocks_match.bed
test/intersect/three_blocks_match_1bp.bed
test/intersect/three_blocks_nomatch.bed
test/intersect/two_blocks.sam
test/intersect/two_blocks_partial.bam
test/intersect/two_blocks_partial.bed