Merge branch 'checkpoint_snakefile_VG' into 'checkpoint_snakefile'
Add PlasFlow and RGI See merge request susheel.busi/ont_pilot_gitlab!69
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- .gitignore 7 additions, 0 deletions.gitignore
- 2019_GDB/config/CONFIG.yaml 40 additions, 14 deletions2019_GDB/config/CONFIG.yaml
- 2019_GDB/envs/plasflow.yaml 90 additions, 0 deletions2019_GDB/envs/plasflow.yaml
- 2019_GDB/envs/rgi.yaml 139 additions, 0 deletions2019_GDB/envs/rgi.yaml
- 2019_GDB/envs/snakemake.yaml 1 addition, 3 deletions2019_GDB/envs/snakemake.yaml
- 2019_GDB/rules/ANALYSIS_RULES 119 additions, 16 deletions2019_GDB/rules/ANALYSIS_RULES
- 2019_GDB/rules/ASSEMBLY_ANNOTATION_RULES 0 additions, 21 deletions2019_GDB/rules/ASSEMBLY_ANNOTATION_RULES
- 2019_GDB/rules/BINNING_RULES 0 additions, 16 deletions2019_GDB/rules/BINNING_RULES
- 2019_GDB/rules/MAPPING_RULES 0 additions, 18 deletions2019_GDB/rules/MAPPING_RULES
- 2019_GDB/rules/METAT_RULES 0 additions, 15 deletions2019_GDB/rules/METAT_RULES
- 2019_GDB/rules/MMSEQ_RULES 0 additions, 16 deletions2019_GDB/rules/MMSEQ_RULES
- 2019_GDB/rules/PLOT_RULES 2 additions, 19 deletions2019_GDB/rules/PLOT_RULES
- 2019_GDB/rules/TAXONOMY_RULES 0 additions, 16 deletions2019_GDB/rules/TAXONOMY_RULES
- 2019_GDB/rules/checkpoint_ASSEMBLY_ANNOTATION_RULES 0 additions, 21 deletions2019_GDB/rules/checkpoint_ASSEMBLY_ANNOTATION_RULES
- 2019_GDB/scripts/filter_fasta_by_length.pl 21 additions, 0 deletions2019_GDB/scripts/filter_fasta_by_length.pl
- 2019_GDB/updated_SNAKEFILE 56 additions, 7 deletions2019_GDB/updated_SNAKEFILE
- 2019_GDB/workflows/analysis.smk 12 additions, 16 deletions2019_GDB/workflows/analysis.smk
- 2019_GDB/workflows/assembly_annotation.smk 7 additions, 27 deletions2019_GDB/workflows/assembly_annotation.smk
- 2019_GDB/workflows/binning.smk 0 additions, 16 deletions2019_GDB/workflows/binning.smk
- 2019_GDB/workflows/checkpoint_assembly_annotation.smk 0 additions, 20 deletions2019_GDB/workflows/checkpoint_assembly_annotation.smk
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