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Commit b40e3bfb authored by Susheel Busi's avatar Susheel Busi
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Update ANALYSIS_RULES

parent 8b1ece35
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1 merge request!67WIP: Checkpoint snakefile
......@@ -185,8 +185,8 @@ rule minced:
(date &&\
export PATH={config[minced][PATH]} &&\
minced {input} {output.mn1} {output.mn2} &&\
echo $(basename -s ".txt" {output.mn1}) >> analysis/crispr/minced/minced_CRISPR_output.txt &&\
grep -c 'CRISPR' {output.mn1} >> analysis/crispr/minced/minced_CRISPR_output.txt &&\
echo $(basename -s ".txt" {output.mn1}) >> results/analysis/crispr/minced/minced_CRISPR_output.txt &&\
grep -c 'CRISPR' {output.mn1} >> results/analysis/crispr/minced/minced_CRISPR_output.txt &&\
date) &> >(tee {log})
"""
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