Skip to content
Snippets Groups Projects
Commit b40e3bfb authored by Susheel Busi's avatar Susheel Busi
Browse files

Update ANALYSIS_RULES

parent 8b1ece35
No related branches found
No related tags found
1 merge request!67WIP: Checkpoint snakefile
...@@ -185,8 +185,8 @@ rule minced: ...@@ -185,8 +185,8 @@ rule minced:
(date &&\ (date &&\
export PATH={config[minced][PATH]} &&\ export PATH={config[minced][PATH]} &&\
minced {input} {output.mn1} {output.mn2} &&\ minced {input} {output.mn1} {output.mn2} &&\
echo $(basename -s ".txt" {output.mn1}) >> analysis/crispr/minced/minced_CRISPR_output.txt &&\ echo $(basename -s ".txt" {output.mn1}) >> results/analysis/crispr/minced/minced_CRISPR_output.txt &&\
grep -c 'CRISPR' {output.mn1} >> analysis/crispr/minced/minced_CRISPR_output.txt &&\ grep -c 'CRISPR' {output.mn1} >> results/analysis/crispr/minced/minced_CRISPR_output.txt &&\
date) &> >(tee {log}) date) &> >(tee {log})
""" """
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment