added plasflow (issue #28): includes important updates of config and snakemake files (32df69ba) · Commits · ESB / ONT_pilot_gitlab · GitLab

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32df69ba

Commit 32df69ba authored 4 years ago by Valentina Galata

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added plasflow (issue #28): includes important updates of config and snakemake files

parent b40e3bfb

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2 merge requests!69Add PlasFlow and RGI,!67WIP: Checkpoint snakefile

Changes 7

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2019_GDB/config/CONFIG.yaml 16 additions, 4 deletions

2019_GDB/config/CONFIG.yaml
2019_GDB/envs/plasflow.yaml 90 additions, 0 deletions

2019_GDB/envs/plasflow.yaml
2019_GDB/envs/snakemake.yaml 1 addition, 3 deletions

2019_GDB/envs/snakemake.yaml
2019_GDB/rules/ANALYSIS_RULES 48 additions, 10 deletions

2019_GDB/rules/ANALYSIS_RULES
2019_GDB/scripts/filter_fasta_by_length.pl 21 additions, 0 deletions

2019_GDB/scripts/filter_fasta_by_length.pl
2019_GDB/updated_SNAKEFILE 32 additions, 6 deletions

2019_GDB/updated_SNAKEFILE
2019_GDB/workflows/analysis.smk 17 additions, 11 deletions

2019_GDB/workflows/analysis.smk

with 225 additions and 34 deletions

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