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Commit 3f1e9492 authored by Susheel Busi's avatar Susheel Busi
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Update Snakefile

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1 merge request!78Add zymo workflow
......@@ -167,7 +167,7 @@ rule analysis_diamond:
"(date && "
"daa={output.daa} && "
"diamond blastp -q {input.faa} --db {input.db} --out {output.daa} -p {threads} --outfmt 100 && "
"diamond view --daa ${{daa%.*}} --max-target-seqs 1 -p {threads} --outfmt {params.outfmt} --out {output.tsv} && "
"diamond view --daa ${{daa%.*}} --max-target-seqs 1 -p {threads} --outfmt {params.outfmt} --out {output.tsv} --id 90 --query-cover 90 --subject-cover 90 --more-sensitive && "
"date) &> {log}"
rule get_headers:
......
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