init setup for preprocessing and assembly
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- Snakefile 18 additions, 12 deletionsSnakefile
- config/config.yaml 140 additions, 128 deletionsconfig/config.yaml
- config/slurm.yaml 45 additions, 14 deletionsconfig/slurm.yaml
- sbatch.sh 1 addition, 1 deletionsbatch.sh
- workflow/rules/assembly.smk 80 additions, 0 deletionsworkflow/rules/assembly.smk
- workflow/rules/preprocessing_lr.smk 19 additions, 19 deletionsworkflow/rules/preprocessing_lr.smk
- workflow/rules/preprocessing_sr.smk 43 additions, 0 deletionsworkflow/rules/preprocessing_sr.smk
- workflow/steps/assembly.smk 17 additions, 0 deletionsworkflow/steps/assembly.smk
- workflow/steps/preprocessing.smk 13 additions, 3 deletionsworkflow/steps/preprocessing.smk
workflow/rules/assembly.smk
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workflow/rules/preprocessing_sr.smk
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workflow/steps/assembly.smk
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