init setup for preprocessing and assembly (6cbf5ed6) · Commits · ESB / ONT_pilot_gitlab · GitLab

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6cbf5ed6

Commit 6cbf5ed6 authored 4 years ago by Valentina Galata

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init setup for preprocessing and assembly

parent ab685564

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1 merge request!76Merge "cleanup" branch with "master" branch

Changes 9

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Snakefile 18 additions, 12 deletions

Snakefile
config/config.yaml 140 additions, 128 deletions

config/config.yaml
config/slurm.yaml 45 additions, 14 deletions

config/slurm.yaml
sbatch.sh 1 addition, 1 deletion

sbatch.sh
workflow/rules/assembly.smk 80 additions, 0 deletions

workflow/rules/assembly.smk
workflow/rules/preprocessing_lr.smk 19 additions, 19 deletions

workflow/rules/preprocessing_lr.smk
workflow/rules/preprocessing_sr.smk 43 additions, 0 deletions

workflow/rules/preprocessing_sr.smk
workflow/steps/assembly.smk 17 additions, 0 deletions

workflow/steps/assembly.smk
workflow/steps/preprocessing.smk 13 additions, 3 deletions

workflow/steps/preprocessing.smk

with 376 additions and 177 deletions

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