GDB config: sormerna update

config/GDB/config.yaml

@@ -74,13 +74,15 @@ fastp:
 
 # rRNA gene filtering
 sortmerna:
-    threads: 20
+    threads: 28
     # References to be used (w/ md5sums)
     refs: [
-        # db6e72022cf650c4b33bd888b92a0391  silva-bac-16s-id90.fasta
+        "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-arc-16s-id95.fasta",
+        "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-arc-23s-id98.fasta",
         "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-bac-16s-id90.fasta",
-        # f347d2f8f8ffbfa28c785e3a9fe3db79  silva-bac-23s-id98.fasta
-        "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-bac-23s-id98.fasta"
+        "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-bac-23s-id98.fasta",
+        "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-euk-18s-id95.fasta",
+        "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-euk-28s-id98.fasta"
     ]
 
 # FastQ QC

config/GDB/slurm.yaml

@@ -240,7 +240,7 @@ tax_kraken2_lr:
     n: 1
     explicit: ""
 
-tax_kaiju_cdhit:
+tax_kaiju:
     time: "00-00:30:00"
     partition: "bigmem"
     qos: "qos-bigmem"