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Commit b5ad0b08 authored by Valentina Galata's avatar Valentina Galata
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updated config.yaml for GDB and mock

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config/GDB/config.yaml
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View file @ b5ad0b08
############################################################
# STEPS
# Pipeline steps to be done
# steps: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
steps: ["taxonomy"]
# Pipeline steps to be done: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
steps: ["assembly", "mapping", "annotation", "analysis", "taxonomy"] # w/o preprocessing as FASTQ files are archived
############################################################
# INPUT
......
config/Zymo-GridION-EVEN-BB-SN/config.yaml
+ 2
− 3
View file @ b5ad0b08
############################################################
# STEPS
# Pipeline steps to be done
# steps: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
steps: ["analysis"]
# Pipeline steps to be done: ["preprocessing", "assembly", "mapping", "annotation", "analysis", "taxonomy"]
steps: ["assembly", "mapping", "annotation", "analysis", "taxonomy"] # w/o preprocessing as FASTQ files are archived
############################################################
# INPUT
......
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