new conda YAML for cd-hit

workflow/envs/cd-hit.yaml

-name: cd-hit
 channels:
   - conda-forge
   - bioconda
-  - defaults
   - r
   - etetoolkit
   - au-eoed
+  - defaults
 dependencies:
   - _libgcc_mutex=0.1
   - _openmp_mutex=4.5
@@ -26,5 +25,3 @@ dependencies:
   - openssl=1.1.1g
   - wget=1.20.1
   - zlib=1.2.11
-prefix: /home/users/sbusi/apps/miniconda3/envs/cd-hit
-

workflow/envs/cdhit.yaml

+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=0_gnu
+  - cd-hit=4.8.1=h8b12597_3
+  - libgcc-ng=9.2.0=h24d8f2e_2
+  - libgomp=9.2.0=h24d8f2e_2
+  - libstdcxx-ng=9.2.0=hdf63c60_2
+  - llvm-openmp=8.0.1=hc9558a2_0
+  - openmp=8.0.1=0
+  - zlib=1.2.11=h516909a_1006

workflow/rules/analysis.smk

@@ -84,7 +84,7 @@ rule analysis_cdhit:
         tool2="|".join(ASSEMBLERS)
     threads: 1 # TODO
     conda:
-        os.path.join(ENV_DIR, "cd-hit.yaml")
+        os.path.join(ENV_DIR, "cdhit.yaml")
     message:
         "CD-HIT: {input}"
     shell: