Commits · 0e08c8a747cb6c817d43e958bf5f9071abf43338 · ESB / ONT_pilot_gitlab

Jun 04, 2020
- Merge branch 'figures_valentina' into 'master' · 0e08c8a7
  Susheel Busi authored 4 years ago
  
  Figures valentina See merge request susheel.busi/ont_pilot_gitlab!68
  0e08c8a7
- rgi figure: intersection plots (issue #31 ) · 56236664
  Valentina Galata authored 4 years ago
  
  56236664
- rgi figure: added hit type - all/strict/nudged (issue #31 ) · 11e4adbd
  Valentina Galata authored 4 years ago
  
  11e4adbd
- comment update in fig_plasflow.R · ed791a47
  Valentina Galata authored 4 years ago
  
  ed791a47
- rgi figure: rm legend (issue #31 ) · c4b33d4e
  Valentina Galata authored 4 years ago
  
  c4b33d4e
- added rgi figure (issue #31 ) · c9726ad4
  Valentina Galata authored 4 years ago
  
  c9726ad4
- added plasflow figure (issue #30 ) · 5cd1eb18
  Valentina Galata authored 4 years ago
  
  5cd1eb18
- changed name of main conda env · d9061116
  Valentina Galata authored 4 years ago
  
  d9061116
Jun 02, 2020
- Merge branch 'figures_valentina' of... · 9108bfe6
  Valentina Galata authored 4 years ago
  
  Merge branch 'figures_valentina' of ssh://git-r3lab-server.uni.lu:8022/susheel.busi/ont_pilot_gitlab into figures_valentina
  9108bfe6
- updated .gitignore to ignore removed files (nanostats/crispr summary; issue #27 ) · 4de01b3b
  Valentina Galata authored 4 years ago
  
  4de01b3b
- rm nanostats and crispr data files in figures/data (issue #27 ) · f25b256b
  Valentina Galata authored 4 years ago
  
  f25b256b
- Add new file · 5bb54bf8
  Susheel Busi authored 4 years ago
  
  5bb54bf8
- added crispr fig (issue #19 ) · d75c0381
  Valentina Galata authored 4 years ago
  
  d75c0381
- updated rule for nanostats summary (issue #18 ); rule for crispr summary (issue #19 ) · 629dc3fc
  Valentina Galata authored 4 years ago
  
  629dc3fc
- added nanostats fig (issue #18 ) · bc7c5db7
  Valentina Galata authored 4 years ago
  
  bc7c5db7
- updated fig: partial gene counts (issue #17 ) · b2f09e02
  Valentina Galata authored 4 years ago
  
  b2f09e02
May 29, 2020
- fixed the issue with empty page before the plot in the pdf (issue #16 ) · d789ece4
  Valentina Galata authored 4 years ago
  
  d789ece4
- added partial gene counts fig (added new line in data file, issue #17 ); minor... · d70ee8ea
  Valentina Galata authored 4 years ago
  
  added partial gene counts fig (added new line in data file, issue #17); minor changes in other fig scripts (because of updated utils.R, issue #15, #16)
  d70ee8ea
- added quast fig (issue #15 ); updated mmseq fig (issue #16 ) · a1a48734
  Valentina Galata authored 4 years ago
  
  a1a48734
- renamed mmseq_upsetr.R · 3b695314
  Valentina Galata authored 4 years ago
  
  3b695314
May 28, 2020
- prelim set-up: snakemake file and config, src for mmseq fig (issue #16 ) · b6c8e53e
  Valentina Galata authored 4 years ago
  
  b6c8e53e
- added conda yaml files · 511bb410
  Valentina Galata authored 4 years ago
  
  511bb410
- added a readme · df627f2c
  Valentina Galata authored 4 years ago
  
  df627f2c
- added gitignore · d12a9b02
  Valentina Galata authored 4 years ago
  
  d12a9b02
- new folder for figure stuff only; mv data and scripts · 755d5f2d
  Valentina Galata authored 4 years ago
  
  755d5f2d
May 27, 2020
- R_scripts used by SB, to make the basic, boring plots · d5af05b1
  Susheel Busi authored 4 years ago
  
  d5af05b1
- added data for plotting in R for VG · 0dd082cc
  Susheel Busi authored 4 years ago
  
  0dd082cc
- Add new directory · a63bb60f
  Susheel Busi authored 4 years ago
  
  a63bb60f
May 26, 2020
- Add new file · 3aab4a2d
  Susheel Busi authored 4 years ago
  
  3aab4a2d
May 14, 2020
- config folder · 1af06b14
  Susheel Busi authored 4 years ago
  
  1af06b14
May 09, 2020
- Update BINNING_RULES · dc87ff4f
  Susheel Busi authored 4 years ago
  
  dc87ff4f
- updated MMSEQ and MAPPING rules to avoid missing input exceptions and for the mmseq error · e03a3502
  Susheel Busi authored 4 years ago
  
  e03a3502
- updated the config file with mmseq paths to local installation due to - 'results2rbh died error' · 0c4653c1
  Susheel Busi authored 4 years ago
  
  0c4653c1
- Update MMSEQ_RULES · 03e53250
  Susheel Busi authored 4 years ago
  
  03e53250
- Update MMSEQ_RULES · 75684db1
  Susheel Busi authored 4 years ago
  
  75684db1
- Update mapping.smk · 539ac4d6
  Susheel Busi authored 4 years ago
  
  539ac4d6
- Update MAPPING_RULES · 90dc7d11
  Susheel Busi authored 4 years ago
  
  90dc7d11
- Update MMSEQ_RULES · fd8f8cd8
  Susheel Busi authored 4 years ago
  
  fd8f8cd8
May 08, 2020
- Update diamond.yaml · d01b33cc
  Susheel Busi authored 4 years ago
  
  d01b33cc
May 07, 2020
- Merge branch '2019_GDB' into 'master' · ee98b17e
  Susheel Busi authored 4 years ago
  
  changes for 2019 data See merge request susheel.busi/ont_pilot_gitlab!66
  ee98b17e