Commits · 5a7350e859c00a2cc02261c2693f99652446bf91 · ESB / ONT_pilot_gitlab · GitLab

Snippets Groups Projects

Jun 03, 2020
- added rgi (issue #29 ) · 5a7350e8
  Valentina Galata authored 4 years ago
  
  5a7350e8
- added plasflow (issue #28 ): includes important updates of config and snakemake files · 32df69ba
  Valentina Galata authored 4 years ago
  
  32df69ba
May 30, 2020
- cleaned up path exporting for rule/ANALYSIS_RULES and added to the config/CONFIG.yaml file · 2717c181
  Susheel Busi authored 4 years ago
  
  2717c181
May 15, 2020
- updated the overal snakefiles including the with the ANALYSIS_RULES · 1ad79bf6
  Susheel Busi authored 4 years ago
  
  1ad79bf6
May 14, 2020
- added the missing config folder · fc05cf06
  Susheel Busi authored 4 years ago
  
  fc05cf06
May 09, 2020
- updated the config file with mmseq paths to local installation due to - 'results2rbh died error' · 0c4653c1
  Susheel Busi authored 4 years ago
  
  0c4653c1
May 06, 2020
- updated configs, rules, etc. for 2019_GDB ONT analyses · e6afa39b
  Susheel Busi authored 4 years ago
  
  e6afa39b
Apr 23, 2020
- added the proper environments for mapping and binning · d5917fb4
  Susheel Busi authored 4 years ago
  
  d5917fb4
- Final files ready for running the 2018_GDB_ONT analyses · 14a84062
  Susheel Busi authored 4 years ago
  
  14a84062
Apr 22, 2020
- Config file with the merges between SB and CCL's version, for the final SNAKEFILE · 927bf1c6
  Susheel Busi authored 4 years ago
  
  927bf1c6
Apr 20, 2020
- updated the metaT details · a0fb6de5
  Susheel Busi authored 4 years ago
  
  a0fb6de5
Mar 25, 2020
- changes to mmseq2 config options, i.e threads · 8ae8b9c3
  Susheel Busi authored 5 years ago
  
  8ae8b9c3
Mar 18, 2020
- config.yaml updated with parameters suggested by ONT for GPU_Basecalling · 000ab11d
  Susheel Busi authored 5 years ago
  
  000ab11d
Mar 17, 2020
- updated files with NO_MOD .cfg basecalling for comparison · 3b5b48dd
  Susheel Busi authored 5 years ago
  
  3b5b48dd
- adding all the pertinent files for the first time to the repository · e77b2621
  Susheel Busi authored 5 years ago
  
  e77b2621