Commits · 629dc3fc1d2740fea906c7d664c70faac3ecfb99 · ESB / ONT_pilot_gitlab

Jun 02, 2020
- updated rule for nanostats summary (issue #18 ); rule for crispr summary (issue #19 ) · 629dc3fc
  Valentina Galata authored 4 years ago
  
  629dc3fc
- added nanostats fig (issue #18 ) · bc7c5db7
  Valentina Galata authored 4 years ago
  
  bc7c5db7
- updated fig: partial gene counts (issue #17 ) · b2f09e02
  Valentina Galata authored 4 years ago
  
  b2f09e02
May 29, 2020
- fixed the issue with empty page before the plot in the pdf (issue #16 ) · d789ece4
  Valentina Galata authored 4 years ago
  
  d789ece4
- added partial gene counts fig (added new line in data file, issue #17 ); minor... · d70ee8ea
  Valentina Galata authored 4 years ago
  
  added partial gene counts fig (added new line in data file, issue #17); minor changes in other fig scripts (because of updated utils.R, issue #15, #16)
  d70ee8ea
- added quast fig (issue #15 ); updated mmseq fig (issue #16 ) · a1a48734
  Valentina Galata authored 4 years ago
  
  a1a48734
- renamed mmseq_upsetr.R · 3b695314
  Valentina Galata authored 4 years ago
  
  3b695314
May 28, 2020
- prelim set-up: snakemake file and config, src for mmseq fig (issue #16 ) · b6c8e53e
  Valentina Galata authored 4 years ago
  
  b6c8e53e
- added conda yaml files · 511bb410
  Valentina Galata authored 4 years ago
  
  511bb410
- added a readme · df627f2c
  Valentina Galata authored 4 years ago
  
  df627f2c
- added gitignore · d12a9b02
  Valentina Galata authored 4 years ago
  
  d12a9b02
- new folder for figure stuff only; mv data and scripts · 755d5f2d
  Valentina Galata authored 4 years ago
  
  755d5f2d
May 27, 2020
- R_scripts used by SB, to make the basic, boring plots · d5af05b1
  Susheel Busi authored 4 years ago
  
  d5af05b1
- added data for plotting in R for VG · 0dd082cc
  Susheel Busi authored 4 years ago
  
  0dd082cc
- Add new directory · a63bb60f
  Susheel Busi authored 4 years ago
  
  a63bb60f
May 26, 2020
- Add new file · 3aab4a2d
  Susheel Busi authored 4 years ago
  
  3aab4a2d
May 14, 2020
- config folder · 1af06b14
  Susheel Busi authored 4 years ago
  
  1af06b14
May 09, 2020
- Update BINNING_RULES · dc87ff4f
  Susheel Busi authored 4 years ago
  
  dc87ff4f
- updated MMSEQ and MAPPING rules to avoid missing input exceptions and for the mmseq error · e03a3502
  Susheel Busi authored 4 years ago
  
  e03a3502
- updated the config file with mmseq paths to local installation due to - 'results2rbh died error' · 0c4653c1
  Susheel Busi authored 4 years ago
  
  0c4653c1
- Update MMSEQ_RULES · 03e53250
  Susheel Busi authored 4 years ago
  
  03e53250
- Update MMSEQ_RULES · 75684db1
  Susheel Busi authored 4 years ago
  
  75684db1
- Update mapping.smk · 539ac4d6
  Susheel Busi authored 4 years ago
  
  539ac4d6
- Update MAPPING_RULES · 90dc7d11
  Susheel Busi authored 4 years ago
  
  90dc7d11
- Update MMSEQ_RULES · fd8f8cd8
  Susheel Busi authored 4 years ago
  
  fd8f8cd8
May 08, 2020
- Update diamond.yaml · d01b33cc
  Susheel Busi authored 4 years ago
  
  d01b33cc
May 07, 2020
- Merge branch '2019_GDB' into 'master' · ee98b17e
  Susheel Busi authored 4 years ago
  
  changes for 2019 data See merge request susheel.busi/ont_pilot_gitlab!66
  ee98b17e
- changes for 2019 data · 588ce7ed
  Susheel Busi authored 4 years ago
  
  588ce7ed
May 06, 2020
- Merge branch '2019_GDB' into 'master' · 539d7f74
  Susheel Busi authored 4 years ago
  
  updated configs, rules, etc. for 2019_GDB ONT analyses See merge request susheel.busi/ont_pilot_gitlab!65
  539d7f74
- updated configs, rules, etc. for 2019_GDB ONT analyses · e6afa39b
  Susheel Busi authored 4 years ago
  
  e6afa39b
May 01, 2020
- minor changes · f286f75b
  Susheel Busi authored 4 years ago
  
  f286f75b
- Add new file · b143371e
  Susheel Busi authored 4 years ago
  
  b143371e
- Merge branch 'work' into 'master' · 9444376f
  Susheel Busi authored 4 years ago
  
  cleaner snakefile for workflow See merge request susheel.busi/ont_pilot_gitlab!64
  9444376f
- cleaner snakefile for workflow · d2bb2244
  Susheel Busi authored 4 years ago
  
  d2bb2244
Apr 30, 2020
- Update assembly_annotation.smk · 3f3bbc8b
  Susheel Busi authored 4 years ago
  
  3f3bbc8b
Apr 29, 2020
- Merge branch 'work' into 'master' · 90955a60
  Susheel Busi authored 4 years ago
  
  updated rules See merge request susheel.busi/ont_pilot_gitlab!62
  90955a60
- updated rules · 09127586
  Susheel Busi authored 4 years ago
  
  09127586
- Merge branch 'work' into 'master' · 3bdbf7f6
  Susheel Busi authored 4 years ago
  
  Work See merge request susheel.busi/ont_pilot_gitlab!61
  3bdbf7f6
- launcher script updated · ea55050b
  Susheel Busi authored 4 years ago
  
  ea55050b
- updated rules for the envs paths · ee91f8fa
  Susheel Busi authored 4 years ago
  
  ee91f8fa