ASSEMBLER addition - OPERA-MS

TODO:

• uncomment the section on OPERA-MS in rules/ASSEMBLY_ANNOTATION_RULES

• add operams as a flag in the assemblers

• BIGGEST CHALLENGE:: mmseqs2 combinations and rule

changed due date to June 29, 2020

changed milestone to %Manuscript - initial version

added Analysis Manuscript labels

changed the description

• perl binary script:: /home/users/sbusi/apps/miniconda3/envs/operams/OPERA-MS/OPERA-MS.pl
• conda environment:: /scratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/envs/operams.yaml

Note: The order of the exported channels will result in an error. The following configuration works:

channels:
  - conda-forge
  - bioconda
  - r
  - etetoolkit
  - au-eoed
  - compbiocore
  - defaults

I thought I installed r-base from the anaconda or rchannel.

You most likely did. The problem is that the order of the channels in the YAML matters, so conda looked somewhere else first and that caused some problems.

Ah.. didn't know that could be an issue. That's my new thing for the day. Thank you!

mentioned in commit e2acad95

mentioned in commit d8f4e72b

The assembler is now included in the branch cleanup.

closed