Add zymo workflow

config/GDB/sbatch.sh

-#!/bin/bash -l
-
-# slurm settings if called using sbatch
-#SBATCH -J ONT_SMK
-#SBATCH -N 1
-#SBATCH -n 1
-#SBATCH -c 1
-#SBATCH --time=3-00:00:00
-#SBATCH -p batch
-#SBATCH --qos=qos-batch
-
-# conda env name or path
-ONTP_ENV="/scratch/users/vgalata/miniconda3/ONT_pilot" # CHANGE as needed
-# config files
-ONTP_CONFIG="config/GDB/config.yaml"
-ONTP_SLURM="config/GDB/slurm.yaml"
-# slurm cluster call
-ONTP_CLUSTER="sbatch -p {cluster.partition} -q {cluster.qos} {cluster.explicit} -N {cluster.nodes} -n {cluster.n} -c {threads} -t {cluster.time} --job-name={cluster.job-name}"
-
-conda activate ${ONTP_ENV} && \
-snakemake -s workflow/Snakefile -rp --jobs 10 --local-cores 1 \
---configfile ${ONTP_CONFIG} --use-conda --conda-prefix ${CONDA_PREFIX}/pipeline \
---cluster-config ${ONTP_SLURM} --cluster "${ONTP_CLUSTER}"