Commits · f360c68985b4a7c21d22fb5d5699f440b02a4529 · IMP-dev / IMP

Nov 09, 2015
- use symlink · f360c689
  Yohan Jarosz authored 9 years ago
  
  f360c689
Nov 08, 2015
- Duse cp · 2200bc23
  Yohan Jarosz authored 9 years ago
  
  2200bc23
Nov 06, 2015
- add /conf · ee0a1189
  Yohan Jarosz authored 9 years ago
  
  ee0a1189
- mount config dir · 3e88cfc9
  Yohan Jarosz authored 9 years ago
  
  3e88cfc9
Nov 02, 2015
- Edit samtools mpileup command · 6fefce81
  Shaman Narayanasamy authored 9 years ago
  
  6fefce81
Oct 31, 2015
- Merge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into dev · 96eb73ca
  Shaman Narayanasamy authored 9 years ago
  
  96eb73ca
Oct 30, 2015
- rm function for preprocessing. Do a different rule inclusion instead · 6848e705
  Yohan Jarosz authored 9 years ago
  
  6848e705
Oct 29, 2015
- MEGAHIT memory parameter · f5d5f651
  Shaman Narayanasamy authored 9 years ago
  
  f5d5f651
- Small change to fix conflict · e237026c
  Shaman Narayanasamy authored 9 years ago
  
  e237026c
- Small correction · 38f54af4
  Shaman Narayanasamy authored 9 years ago
  
  38f54af4
- add config file user supplied also for init step · 1df5ff1d
  Yohan Jarosz authored 9 years ago
  
  1df5ff1d
- fix formatting issues · 9f7ae51d
  Yohan Jarosz authored 9 years ago
  
  9f7ae51d
- typo · b649fe67
  Yohan Jarosz authored 9 years ago
  
  b649fe67
- typo · b24381e1
  Yohan Jarosz authored 9 years ago
  
  b24381e1
- Set Default version · d3cdfd8b
  Yohan Jarosz authored 9 years ago
  
  d3cdfd8b
- add code to ship IMP codebase inside the container · 6a59a63e
  Yohan Jarosz authored 9 years ago
  
  6a59a63e
- Document config file parameters · 7fbcc52e
  Yohan Jarosz authored 9 years ago
  
  7fbcc52e
- Mount the current IMP codebase via --current option · 7b72d74e
  Yohan Jarosz authored 9 years ago
  
  7b72d74e
- add doc for usage · 2b4417ae
  Yohan Jarosz authored 9 years ago
  
  2b4417ae
- rm git hash from IMP version information · c16e2e96
  Yohan Jarosz authored 9 years ago
  
  c16e2e96
Oct 27, 2015
- Change variant call rules · bc9f29a7
  Shaman Narayanasamy authored 9 years ago
  
  bc9f29a7
Oct 23, 2015
- add doc for parameters · dbeb8c91
  Yohan Jarosz authored 9 years ago
  
  dbeb8c91
- add readme + docs · edebe63e
  Yohan Jarosz authored 9 years ago
  
  edebe63e
- rm some comments + fix PEP8 · 3d5bd437
  Yohan Jarosz authored 9 years ago
  
  3d5bd437
- delete README for docker compose · 2e687c4e
  Yohan Jarosz authored 9 years ago
  
  2e687c4e
- change CL · 4a5a1ea4
  Yohan Jarosz authored 9 years ago
  
  4a5a1ea4
- change path of snakemake config file and init · 1ea749ea
  Yohan Jarosz authored 9 years ago
  
  1ea749ea
Oct 14, 2015
- Comment out VCF merging step since it is taking too damn long · 5f1bb06d
  Shaman Narayanasamy authored 9 years ago
  
  5f1bb06d
Oct 13, 2015
- Merge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into dev · 2760564e
  Shaman Narayanasamy authored 9 years ago
  
  2760564e
- Handle exceptions in R script; Robustification · 72cbd15e
  Shaman Narayanasamy authored 9 years ago
  
  72cbd15e
Oct 10, 2015
- Small comment change · d1374034
  Shaman Narayanasamy authored 9 years ago
  
  d1374034
Oct 09, 2015
- Ignore last added file · 80dfedb9
  Shaman Narayanasamy authored 9 years ago
  
  80dfedb9
- Add instructions to upload container · e28ad91b
  Shaman Narayanasamy authored 9 years ago
  
  e28ad91b
- add readme to build a tarball · d2f8c2aa
  Yohan Jarosz authored 9 years ago
  
  d2f8c2aa
Oct 08, 2015
- Fix bug in R plotting script · 3fa64749
  Shaman Narayanasamy authored 9 years ago
  
  3fa64749
Oct 07, 2015
- Bug fix in R readGff function · ec3b4852
  Shaman Narayanasamy authored 9 years ago
  
  ec3b4852
Oct 02, 2015
- Changed prokka setting to include rRNA annotation · fee9e6f8
  Shaman Narayanasamy authored 9 years ago
  
  fee9e6f8
- R scripts saves data incrementally · 20be7b1d
  Shaman Narayanasamy authored 9 years ago
  
  20be7b1d
- Renaming of analysis steps · 1116d233
  Shaman Narayanasamy authored 9 years ago
  
  1116d233
- Changed names and streamlined rules · 0b2734b9
  Shaman Narayanasamy authored 9 years ago
  
  0b2734b9