src/intersectBed/intersectBed.cpp

src/mapBed/mapBed.cpp

src/mapBed/mapBed.h

src/mapBed/mapMain.cpp

test/bamtobed/one_block.sam

test/bamtobed/test-bamtobed.sh

test/bamtobed/three_blocks.sam

test/bamtobed/two_blocks.sam

test/bed12tobed6/bed6.bed

test/bed12tobed6/one_blocks.bed

test/bed12tobed6/test-bed12tobed6.sh

test/bed12tobed6/three_blocks.bed

test/bed12tobed6/two_blocks.bed

test/genomecov/one_block.sam

test/genomecov/sam-w-del.sam

test/genomecov/test-genomecov.sh

test/genomecov/three_blocks.sam

test/genomecov/three_blocks_match.bed

test/genomecov/three_blocks_match_1bp.bed

test/genomecov/three_blocks_nomatch.bed