Commits · 706608e56673c12231f7982e07568a6a8bc51d61 · R3 / legacy / bedtools2

Feb 26, 2015
- added unit tests for -sorted and multiple databases. · 706608e5
  Neil Kindlon authored 10 years ago
  
  706608e5
- First check-in for new version of subtract · 6961cd20
  Neil Kindlon authored 10 years ago
  
  6961cd20
Feb 23, 2015
- Added unit test for closest to check -header option · 4abcc2b0
  Neil Kindlon authored 10 years ago
  
  4abcc2b0
- Merge remote-tracking branch 'upstream/master' · e5878aaf
  Neil Kindlon authored 10 years ago
  
  e5878aaf
- Fixed bug for -nonamecheck, added help, unit test · 78c266dc
  Neil Kindlon authored 10 years ago
  
  78c266dc
- enable -header for closest. · 59f252a8
  arq5x authored 10 years ago
  
  59f252a8
- Merge pull request #201 from nkindlon/master · 5cc56ed9
  Aaron Quinlan authored 10 years ago
  
  Added first and last to help options for -o
  5cc56ed9
- Added first and last to help options for -o · 33577de0
  Neil Kindlon authored 10 years ago
  
  33577de0
- update docs for 2.23.0 · 05ecd835
  arq5x authored 10 years ago
  
  05ecd835
Feb 22, 2015
- Setting Release-Version v2.23.0 · 8456c202
  arq5x authored 10 years ago
  
  v2.23.0
  
  8456c202
Feb 21, 2015
- Merge pull request #194 from jayhesselberth/reverse-windows · c432a190
  Aaron Quinlan authored 10 years ago
  
  `-reverse` option added to `makewindows`
  c432a190
- all tests pass · efda13cb
  jayhesselberth authored 10 years ago
  
  efda13cb
- test stubs; ``-n`` is excepting now · 66b1d64f
  jayhesselberth authored 10 years ago
  
  66b1d64f
- test stub; refactor num_window calculation · d98c7f8f
  jayhesselberth authored 10 years ago
  
  d98c7f8f
- fix param parsing; add 1 to win number · 33d4cc21
  jayhesselberth authored 10 years ago
  
  33d4cc21
- clean compile, need to test · 6eada05c
  jayhesselberth authored 10 years ago
  
  6eada05c
Feb 17, 2015
- Merge pull request #190 from nkindlon/master · 64b95927
  Aaron Quinlan authored 10 years ago
  
  bug fixes for kclosest sorted output, 0 length records, and map a vs b file with multi-dbs
  64b95927
- Fixed context error that broke merge · 59116f2d
  Neil Kindlon authored 10 years ago
  
  59116f2d
Feb 14, 2015
- forgot new test files for intersect unit tests · 4a9a6c2b
  Neil Kindlon authored 10 years ago
  
  4a9a6c2b
Feb 13, 2015
- bug fixes for kclosest sorted output, 0 length records, and map a vs b file with multi-dbs · dbc19ad2
  Neil Kindlon authored 10 years ago
  
  dbc19ad2
Feb 11, 2015
- Merge pull request #179 from nkindlon/master · 59b7ab67
  Aaron Quinlan authored 10 years ago
  
  k closest completed
  59b7ab67
Feb 05, 2015
- formatting · 26892d44
  arq5x authored 10 years ago
  
  26892d44
- deprecate -abam and update help to show that -a supports BAM · 068cc3ab
  arq5x authored 10 years ago
  
  068cc3ab
- [BUG] -s is not required with -n · b561cf55
  arq5x authored 10 years ago
  
  b561cf55
Jan 27, 2015
- Cahnged Closest's RecDistList class to not use map · ba3bb104
  Neil Kindlon authored 10 years ago
  
  ba3bb104
Jan 26, 2015
- yet another merge error · e7656ff4
  Neil Kindlon authored 10 years ago
  
  e7656ff4
- another merge error · 217cad41
  Neil Kindlon authored 10 years ago
  
  217cad41
- forgot context Makefile · 3735ff48
  Neil Kindlon authored 10 years ago
  
  3735ff48
- Merge error corrections · 0efb547e
  Neil Kindlon authored 10 years ago
  
  0efb547e
- src/utils/Contexts/ContextBase.cpp · 291f23be
  Neil Kindlon authored 10 years ago
  
  291f23be
- Fixing merge errors · 930ddce8
  Neil Kindlon authored 10 years ago
  
  930ddce8
- Added files · 90892a6b
  Neil Kindlon authored 10 years ago
  
  90892a6b
- Added closest -fu and -fd, updated help · 29fe57fc
  Neil Kindlon authored 10 years ago
  
  29fe57fc
- Merge remote-tracking branch 'upstream/master' · 24cdf1f2
  Neil Kindlon authored 10 years ago
  
  24cdf1f2
- Merge branch 'master' of https://github.com/nkindlon/bedtools2 · 1d1d36d8
  Neil Kindlon authored 10 years ago
  
  1d1d36d8
- addressing merge conflict · 60f99fb0
  Neil Kindlon authored 10 years ago
  
  60f99fb0
- K closest finally working; chrom name conventions test change · 24e97ccb
  Neil Kindlon authored 10 years ago
  
  24e97ccb
Jan 20, 2015
- add missing includes · d6547b35
  arq5x authored 10 years ago
  
  d6547b35
Jan 16, 2015
- right, the actual spacing code. · 2b1df940
  arq5x authored 10 years ago
  
  2b1df940
- added note about sorted input. · 3bea2a71
  arq5x authored 10 years ago
  
  3bea2a71