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Commit ac052dd3 authored by Marek Ostaszewski's avatar Marek Ostaszewski
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HMOX1 example added

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......@@ -21,11 +21,20 @@ ask_GET <- function(fask_url, verbose = F) {
return(NULL)
}
### Example 1
ER_sif_raw <- "https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
### Define the source diagram name
diag_name <- "Endoplasmatic Reticulum stress"
### Read in the raw SIF version (here straight from the github of Aurelien)
raw_sif <- read.table(url("https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"),
### Example 2
HMOX_sif_raw <- "https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif"
### Define the source diagram name
diag_name <- "HMOX1 pathway"
### Read in the raw SIF version (here straight from the gitlab repo)
raw_sif <- read.table(url(HMOX_sif_raw),
sep = " ", header = F, stringsAsFactors = F)
### Get MINERVA elements
......
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