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COVID-19
models
Commits
ac052dd3
Commit
ac052dd3
authored
4 years ago
by
Marek Ostaszewski
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HMOX1 example added
parent
ef7bbee1
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!261
HMOX1 example added
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#36559
passed
4 years ago
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Resources/Hipathia/resolve_aliases.R
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Resources/Hipathia/resolve_aliases.R
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ac052dd3
...
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@@ -21,11 +21,20 @@ ask_GET <- function(fask_url, verbose = F) {
return
(
NULL
)
}
### Example 1
ER_sif_raw
<-
"https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
### Define the source diagram name
diag_name
<-
"Endoplasmatic Reticulum stress"
### Read in the raw SIF version (here straight from the github of Aurelien)
raw_sif
<-
read.table
(
url
(
"https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
),
### Example 2
HMOX_sif_raw
<-
"https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif"
### Define the source diagram name
diag_name
<-
"HMOX1 pathway"
### Read in the raw SIF version (here straight from the gitlab repo)
raw_sif
<-
read.table
(
url
(
HMOX_sif_raw
),
sep
=
" "
,
header
=
F
,
stringsAsFactors
=
F
)
### Get MINERVA elements
...
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