Commits · 6fbe9845d776ad10e5f3ae92fc2e850999dcc974 · minerva / core · GitLab

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Nov 16, 2018
- gpml parser doesn't put compartment into element inside complexes · 7aea8b7b
  Piotr Gawron authored 6 years ago
  
  7aea8b7b
Oct 19, 2018
- removing all // that are not comments · 14aed039
  Sascha Herzinger authored 6 years ago
  
  14aed039
Oct 17, 2018
- ignore bin folder · 3be2e6cd
  Piotr Gawron authored 6 years ago
  
  3be2e6cd
- eclipse configuration files removed · 193ce4a6
  Piotr Gawron authored 6 years ago
  
  193ce4a6
Oct 16, 2018
- bundle plugin upgraded · 1bea1514
  Piotr Gawron authored 6 years ago
  
  1bea1514
- junit dependecy included properly · 12c9e790
  Piotr Gawron authored 6 years ago
  
  12c9e790
Oct 05, 2018
- coordinates of genes should be normalized differently than proteins · 61e2e608
  Piotr Gawron authored 6 years ago
  
  61e2e608
Sep 19, 2018
- conflicting dependencies in libsbml · ded51f40
  David Hoksza authored 6 years ago
  
  ded51f40
- conflicting dependencies in libsbml · 4fd983ad
  David Hoksza authored 6 years ago
  
  4fd983ad
Sep 11, 2018
- logging tuned to remove unused messages · 75aa8541
  Piotr Gawron authored 6 years ago
  
  75aa8541
Sep 10, 2018
- skip info about warnings when serializing · 736532db
  Piotr Gawron authored 6 years ago
  
  736532db
Aug 30, 2018
- new line characters unified to use linux standard · 97b985af
  Piotr Gawron authored 6 years ago
  
  97b985af
Jul 11, 2018
- species modifications changed in hierarchical structure · ca4d2258
  Piotr Gawron authored 6 years ago
  
  ca4d2258
- ModificationSite and Residue classes extracted · 14a66f69
  Piotr Gawron authored 6 years ago
  
  14a66f69
Jul 10, 2018
- protein modification has x,y coordinats instead of CellDesigner angle · 1fe7ff92
  Piotr Gawron authored 6 years ago
  
  1fe7ff92
Apr 06, 2018
- logging to file disabled · 37bb9212
  Piotr Gawron authored 7 years ago
  
  37bb9212
- after changing model the constructor of wikipathways modifier crashed · 6812672c
  Piotr Gawron authored 7 years ago
  
  6812672c
Oct 17, 2017
- verify annotations dialog implemented · 389369e3
  Piotr Gawron authored 7 years ago
  
  389369e3
Sep 26, 2017
- verify annotations dialog implemented · 1d1e8303
  Piotr Gawron authored 7 years ago
  
  1d1e8303
Sep 25, 2017
- build-deploy fixed on linux · aadf87c8
  Piotr Gawron authored 7 years ago
  
  aadf87c8
Aug 04, 2017
- missing folders added (With some stub files in them) · 6ca3d6cd
  Piotr Gawron authored 7 years ago
  
  6ca3d6cd
Jun 30, 2017
- gpml compartment parent is set properly · 8e8debc7
  Piotr Gawron authored 7 years ago
  
  8e8debc7
Jun 28, 2017
- Model.getAnnotatedObejcts renamed to getBioEntities · 7a2352d1
  Piotr Gawron authored 7 years ago
  
  7a2352d1
Jun 26, 2017
- AnnotatedObject renamed to BioEntity · d09f5464
  Piotr Gawron authored 7 years ago
  
  d09f5464
Dec 28, 2016
- pathvisio converter fixes · 2f45454e
  Piotr Gawron authored 8 years ago
  
  2f45454e
Oct 27, 2016
- model warnings moved to project (issue #9 ) · 24d6947d
  Piotr Gawron authored 8 years ago
  
  24d6947d
Oct 07, 2016
- missing javadocs · 61428ff1
  piotr.gawron authored 8 years ago
  
  61428ff1
Oct 06, 2016
- Element.parent property removed · a9e3fb40
  piotr.gawron authored 8 years ago
  
  a9e3fb40
Oct 05, 2016
- renaming of model structures + javadoc update · ec4e94be
  piotr.gawron authored 8 years ago
  
  ec4e94be
- model javadoc added and structure refactoried · f8f4a66f
  piotr.gawron authored 8 years ago
  
  f8f4a66f
Oct 04, 2016
- polishing distinction betwen model and celldesigner parser · a18fbfa6
  piotr.gawron authored 8 years ago
  
  a18fbfa6
Oct 03, 2016
- base refactoring finsihed · cd8d1eb1
  piotr.gawron authored 8 years ago
  
  classes renamed to species (there are no aliases anymore) database data about annotators cleared
  cd8d1eb1
- model and db refactoried, almost all test pass · 6db1fa6f
  piotr.gawron authored 8 years ago
  
  6db1fa6f
Sep 30, 2016
- cell designer structures moved to celldesigner module, in progress · d357d2b2
  piotr.gawron authored 8 years ago
  
  d357d2b2
Sep 29, 2016
- pathvisio converter updated to remove all references to species · 5d33db95
  piotr.gawron authored 8 years ago
  
  5d33db95
- most of pathvisio tests fixed · 7716024d
  piotr.gawron authored 8 years ago
  
  7716024d
- refactoring · acd025b3
  piotr.gawron authored 8 years ago
  
  command tests fixed, converter tests fixed and some pathvisio tests fixed
  acd025b3
- refactoring · 654f4560
  piotr.gawron authored 8 years ago
  
  model-command, graphics and pathvisio converter in progress
  654f4560
Sep 28, 2016

partial working new model: · af954491

piotr.gawron authored 8 years ago

model refactoried, celldesigner parser passes tests

the rest stil to be done

af954491

Sep 26, 2016
- temp commit - species alias is abstract and there are specific alias · 0eff3a99
  piotr.gawron authored 8 years ago
  
  classes for all species
  0eff3a99