- Nov 03, 2012
-
-
Aaron authored
-
- Nov 02, 2012
- Oct 31, 2012
-
-
Aaron authored
-
- Oct 30, 2012
- Oct 29, 2012
-
-
Aaron authored
-
Aaron authored
-
Aaron Quinlan authored
WIP: improvements to getfasta / fastaFromBed
-
Brent Pedersen authored
-
Brent Pedersen authored
-
Brent Pedersen authored
-
Brent Pedersen authored
-
Brent Pedersen authored
-
Aaron authored
-
Aaron authored
when the database (-b) file has many more intervals than the query file. Thanks to Neil Kindlon (Quinlan Lab)."
-
- Oct 22, 2012
- Oct 11, 2012
-
-
Aaron Quinlan authored
3 one-line changes to allow regression tests to run on OS X / BSD, and compilation on FreeBSD
-
- Oct 10, 2012
-
-
Nathan Weeks authored
If "tac" doesn't exist (e.g., on non GNU/Linux systems like OS X & other BSDs), emulate with sed '1!G;h;$!d' (from http://www.catonmat.net/blog/sed-one-liners-explained-part-one/) Since the Makefile executes tests using "sh" instead of "bash", use the more portable "> obs 2>&1" instead of "&> obs" so the test will pass when /bin/sh isn't bash (e.g., on Debian-based Linux distributions, and most non-Linux *nix systems).
-
Nathan Weeks authored
sockaddr_in and sockaddr_in6 are defined in netinet/in.h, which may or may not be included by arpa/inet.h (per POSIX.1-2008). Explicitly include netinet/in.h to compilation on FreeBSD 9.0.
-
- Sep 19, 2012
-
-
Aaron authored
-
- Sep 18, 2012
-
-
Aaron Quinlan authored
let groupby handle a header line (starting with "#") as do other
-
Brent Pedersen authored
bedtools subcommands.
-
- Sep 17, 2012
-
-
Aaron authored
-
- Aug 31, 2012
-
-
Aaron authored
-
- Aug 30, 2012
-
-
Aaron authored
-
- Aug 24, 2012
-
-
Aaron authored
-
Aaron Quinlan authored
Groupby columns specified like cut (but retaining order)
-
Brent Pedersen authored
-
Brent Pedersen authored
-
Brent Pedersen authored
-
- Aug 23, 2012
-
-
Aaron authored
-
- Aug 14, 2012
-
-
Aaron authored
-