Commits · 7b6d59097b40607feb67b5a13ce39dd6e617637a · minerva / core · GitLab

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Sep 10, 2018
- allow to not export warnings into notes · 33e570b5
  Piotr Gawron authored 6 years ago
  
  33e570b5
- default 0 value is sometimes problematic · 683bc80c
  Piotr Gawron authored 6 years ago
  
  683bc80c
Aug 30, 2018
- new line characters unified to use linux standard · 97b985af
  Piotr Gawron authored 6 years ago
  
  97b985af
Aug 29, 2018
- reduced modulation should have a diamond arrow · aa28dc14
  Piotr Gawron authored 6 years ago
  
  aa28dc14
Jul 13, 2018
- drawing modifications implemented for all types of modifications · 6043d89c
  Piotr Gawron authored 6 years ago
  
  6043d89c
- processing modification site for rna/antisense rna uses proper modification type · b833152e
  Piotr Gawron authored 6 years ago
  
  b833152e
Jul 12, 2018
- export to xml of modifications fixed · 96dd9860
  Piotr Gawron authored 6 years ago
  
  96dd9860
- TranscriptionSite data model supported · 48e20687
  Piotr Gawron authored 6 years ago
  
  48e20687
- BindingRegion data model is supported · 60984743
  Piotr Gawron authored 6 years ago
  
  60984743
- BindingRegion data model · 994a828e
  Piotr Gawron authored 6 years ago
  
  994a828e
- ModificationType enum extracted · 2f93cf65
  Piotr Gawron authored 6 years ago
  
  2f93cf65
Jul 11, 2018
- creating modifications simplified · ba1088ea
  Piotr Gawron authored 6 years ago
  
  ba1088ea
- cell designer structures for storing modification data simplified · 6932c247
  Piotr Gawron authored 6 years ago
  
  6932c247
- species modifications changed in hierarchical structure · ca4d2258
  Piotr Gawron authored 6 years ago
  
  ca4d2258
- rna region is a subclass of modification residue · b2c643f0
  Piotr Gawron authored 6 years ago
  
  b2c643f0
- antesense rna region is a subclass of modification residue · 1eff0b42
  Piotr Gawron authored 6 years ago
  
  1eff0b42
- ModificationSite and Residue classes extracted · 14a66f69
  Piotr Gawron authored 6 years ago
  
  14a66f69
- rna region uses width instead of CellDesigner relative size · 29a98a2a
  Piotr Gawron authored 6 years ago
  
  29a98a2a
Jul 10, 2018
- rna regions use x,y coordinates instead of CellDesigner angle · 1b12ded6
  Piotr Gawron authored 6 years ago
  
  1b12ded6
- protein modification has x,y coordinats instead of CellDesigner angle · 1fe7ff92
  Piotr Gawron authored 6 years ago
  
  1fe7ff92
Jul 09, 2018
- unused CellDesigner parameters removed · bac4b5bb
  Piotr Gawron authored 6 years ago
  
  bac4b5bb
- antisense rna region has width with absolute values instead of CellDesigner relative values · ee9b37d7
  Piotr Gawron authored 6 years ago
  
  ee9b37d7
Jul 06, 2018
- position is passed properly to the model · d45c3603
  Piotr Gawron authored 6 years ago
  
  d45c3603
- coordinates of antisense rna region are absolute x,y values · 2a51de93
  Piotr Gawron authored 6 years ago
  
  2a51de93
May 23, 2018
- when exporting reaction that has the same product and reactant system doesn't crash · 82eee881
  Piotr Gawron authored 6 years ago
  
  Instead of crashing reaction is omitted and proper info is added to the model notes.
  82eee881
Apr 05, 2018
- parsing and exporting stoichiometry · 5166eae1
  Piotr Gawron authored 6 years ago
  
  5166eae1
Feb 20, 2018
- various style checking warnings fixed · b746ebaa
  Piotr Gawron authored 7 years ago
  
  b746ebaa
Feb 15, 2018
- parsing of celldesigner reactions that are in fact modifiers supported · 29289000
  Piotr Gawron authored 7 years ago
  
  29289000
Feb 12, 2018
- info about constant, boundary cond is passed up properly · 2f2c79b8
  Piotr Gawron authored 7 years ago
  
  2f2c79b8
- fix on kinetics in reactions with complex modifiers · b5a4d8a7
  Piotr Gawron authored 7 years ago
  
  b5a4d8a7
- sbml function mathML is parsed properly · a3129c01
  Piotr Gawron authored 7 years ago
  
  a3129c01
- annotatio test files moved to converter · 79f18377
  Piotr Gawron authored 7 years ago
  
  79f18377
- xml parser moved to converter (so all converter have access to it) · 5f57c4bc
  Piotr Gawron authored 7 years ago
  
  5f57c4bc
- import export of sbml functions and parameters · f08cfc1e
  Piotr Gawron authored 7 years ago
  
  f08cfc1e
- simple export of reaction kinetics · db9da582
  Piotr Gawron authored 7 years ago
  
  db9da582
- kinetics equation can contain compartment id · 2d8b3e82
  Piotr Gawron authored 7 years ago
  
  2d8b3e82
- export of unit definition added · 6f235bae
  Piotr Gawron authored 7 years ago
  
  6f235bae
- export of kinetics to CellDeisgner added · 91632a3b
  Piotr Gawron authored 7 years ago
  
  91632a3b
- parsing of species kinetics parameters added · be3c8353
  Piotr Gawron authored 7 years ago
  
  be3c8353
- kinetics parser added · 9958d303
  Piotr Gawron authored 7 years ago
  
  9958d303