Commits · 382688144a0f2edb2a6dfd6ec0835418d81b30de · ESB / ONT_pilot_gitlab · GitLab

Snippets Groups Projects

Aug 21, 2020
- Update sbatch.sh · 38268814
  Susheel Busi authored 4 years ago
  
  38268814
Aug 20, 2020
- Zymo/GSI20 configs: replaced main conda env path · 4ac143ff
  Valentina Galata authored 4 years ago
  
  4ac143ff
Aug 17, 2020
- zymo configs: updated · 14c69148
  Valentina Galata authored 4 years ago
  
  14c69148
Jul 13, 2020
- minor changes in sbatch.sh (GDB, Zymo) · 6809a185
  Valentina Galata authored 4 years ago
  
  6809a185
- renamed in config/: Zymo-GridION-EVEN-BB-SN to Zymo · 8d46c000
  Valentina Galata authored 4 years ago
  
  8d46c000
Jul 09, 2020
- added circ_contigs_fasta.py (issue #53 ); added kraken2 (tax) (issue #55 ) · 334acc25
  Valentina Galata authored 4 years ago
  
  334acc25
- updated Zymo-GridION-EVEN-BB-SN/sbatch.sh · abc1d13b
  Valentina Galata authored 4 years ago
  
  abc1d13b
- mv config/sbatch.sh to sub-folder Zymo-GridION-EVEN-BB-SN · 931d24db
  Valentina Galata authored 4 years ago
  
  931d24db
- updated sbatch file for MOCK run · f6f57407
  Susheel Busi authored 4 years ago
  
  f6f57407
Jul 08, 2020
- added slurm.yaml for Zymo-GridION-EVEN-BB-SN; rm not used configs · c6afa55b
  Valentina Galata authored 4 years ago
  
  c6afa55b
Jun 30, 2020
- added configs for GDB (same as the ones in config/); mv sbatch.sh to config/ (issue #45 ) · 7ccc3d89
  Valentina Galata authored 4 years ago
  
  7ccc3d89
Jun 29, 2020
- sbatch.sh -- more cores for the pipeline · 3a97208b
  Valentina Galata authored 4 years ago
  
  3a97208b
Jun 24, 2020
- changed structure to incl metat: updated prepare_input and preprocessing, other minor changes · a17cbe8b
  Valentina Galata authored 4 years ago
  
  a17cbe8b
Jun 11, 2020
- sbatch.sh: more cores for snakemake · ac1679b0
  Valentina Galata authored 4 years ago
  
  ac1679b0
Jun 10, 2020
- init setup for preprocessing and assembly · 6cbf5ed6
  Valentina Galata authored 4 years ago
  
  6cbf5ed6
- initial fast5 setup, basecalling and nanostat · 5feedaab
  Valentina Galata authored 4 years ago
  
  5feedaab