Commits · 6cbf5ed6c15dd7258c704712016062c38afd7fa3 · ESB / ONT_pilot_gitlab

Jun 10, 2020
- init setup for preprocessing and assembly · 6cbf5ed6
  Valentina Galata authored 4 years ago
  
  6cbf5ed6
- updated input preparation rules · ab685564
  Valentina Galata authored 4 years ago
  
  ab685564
- initial fast5 setup, basecalling and nanostat · 5feedaab
  Valentina Galata authored 4 years ago
  
  5feedaab
Jun 09, 2020
- updated changes from commit a763ff07 and some other minor updates · ede047bc
  Valentina Galata authored 4 years ago
  
  ede047bc
- minor changes in Snakemake file · 2e17bac2
  Valentina Galata authored 4 years ago
  
  2e17bac2
- updated step analysis · 98955ae9
  Valentina Galata authored 4 years ago
  
  98955ae9
- updated step taxonomy · a020fdeb
  Valentina Galata authored 4 years ago
  
  a020fdeb
- updated step binning · c27407fb
  Valentina Galata authored 4 years ago
  
  c27407fb
- updated step mapping · da325067
  Valentina Galata authored 4 years ago
  
  da325067
- updated step metaT · 1ff81596
  Valentina Galata authored 4 years ago
  
  1ff81596
- updated step mmseq and Snakemake file · 1a3372a3
  Valentina Galata authored 4 years ago
  
  1a3372a3
- updated step assembly_annotation and checkpoint_assembly_annotation · 7ea13441
  Valentina Galata authored 4 years ago
  
  7ea13441
- updated step assembly_annotation · 4777cc38
  Valentina Galata authored 4 years ago
  
  4777cc38
- mv 2019_GDB/updated_SNAKEFILE -> Snakefile · 923c4b46
  Valentina Galata authored 4 years ago
  
  923c4b46
Jun 03, 2020
- config/import clean-up · ac10becd
  Valentina Galata authored 4 years ago
  
  ac10becd
- config/import clean-up · 00d122a1
  Valentina Galata authored 4 years ago
  
  00d122a1
- added rgi (issue #29 ) · 5a7350e8
  Valentina Galata authored 4 years ago
  
  5a7350e8
- added plasflow (issue #28 ): includes important updates of config and snakemake files · 32df69ba
  Valentina Galata authored 4 years ago
  
  32df69ba
May 28, 2020
- added the CRISPR related environments, rules and modified the workflows and... · f0e70006
  Susheel Busi authored 4 years ago
  
  added the CRISPR related environments, rules and modified the workflows and updated_SNAKEFILE accordingly
  f0e70006
- added rules for mappability_index and estimating unique_mapped_reads from BAM files · 9cdb8210
  Susheel Busi authored 4 years ago
  
  9cdb8210
May 27, 2020
- updated the working and workflows SNAKEFILES with additional flag for using... · 9beaa36c
  Susheel Busi authored 4 years ago
  
  updated the working and workflows SNAKEFILES with additional flag for using checkpoints during assembly and annotation
  9beaa36c
May 15, 2020
- updated the overal snakefiles including the with the ANALYSIS_RULES · 1ad79bf6
  Susheel Busi authored 4 years ago
  
  1ad79bf6
May 06, 2020
- updated configs, rules, etc. for 2019_GDB ONT analyses · e6afa39b
  Susheel Busi authored 4 years ago
  
  e6afa39b
May 01, 2020
- cleaner snakefile for workflow · d2bb2244
  Susheel Busi authored 4 years ago
  
  d2bb2244