Commits · 7ea1344165199a9f576477f42ef9bef49fdaf5ae · ESB / ONT_pilot_gitlab

Jun 09, 2020
- updated step assembly_annotation and checkpoint_assembly_annotation · 7ea13441
  Valentina Galata authored 4 years ago
  
  7ea13441
- updated step assembly_annotation · 4777cc38
  Valentina Galata authored 4 years ago
  
  4777cc38
- mv config out of workflow · d09a3470
  Valentina Galata authored 4 years ago
  
  d09a3470
- mv rule files · 697cb518
  Valentina Galata authored 4 years ago
  
  697cb518
- mv 2019_GDB/updated_SNAKEFILE -> Snakefile · 923c4b46
  Valentina Galata authored 4 years ago
  
  923c4b46
- made all non-script files not executable; scripts are only executable by user and group · c372fce1
  Valentina Galata authored 4 years ago
  
  c372fce1
- mv workflows/rules/scripts/env/config/src from 2019_GDB · d4e02299
  Valentina Galata authored 4 years ago
  
  d4e02299
- rm not relevant files and files to be replaced by 2019_GDB · 93bda1eb
  Valentina Galata authored 4 years ago
  
  93bda1eb
- Merge branch 'checkpoint_snakefile' into 'master' · 73139918
  Valentina Galata authored 4 years ago
  
  Merge branch 'master' into 'checkpoint_snakefile' See merge request susheel.busi/ont_pilot_gitlab!72
  73139918
- Merge branch 'master' into 'checkpoint_snakefile' · 01cce3c0
  Valentina Galata authored 4 years ago
  
  Master See merge request susheel.busi/ont_pilot_gitlab!71
  01cce3c0
- Merge branch 'checkpoint_snakefile' into 'master' · 2173f20a
  Valentina Galata authored 4 years ago
  
  # Conflicts: # .gitignore # config/CONFIG.yaml
  2173f20a
- Merge branch 'figs_vg' into 'master' · 2389917f
  Susheel Busi authored 4 years ago
  
  Add latest figure updates See merge request susheel.busi/ont_pilot_gitlab!70
  2389917f
- crispr data/fig: filter casc results (issue #19 ) · a12b69cc
  Valentina Galata authored 4 years ago
  
  a12b69cc
- crispr fig: num of spacers/arrays per assembly; contig intersections (issue #19 ) · 25b450c3
  Valentina Galata authored 4 years ago
  
  25b450c3
Jun 08, 2020
- updated rule to collect CRISPR data (issue #19 ); added figures/src/utils.py · 1990f776
  Valentina Galata authored 4 years ago
  
  1990f776
- updated .gitignore: ignore __pycache__/ · 845ab336
  Valentina Galata authored 4 years ago
  
  845ab336
Jun 04, 2020
- Merge branch 'figures_valentina' into 'master' · 0e08c8a7
  Susheel Busi authored 4 years ago
  
  Figures valentina See merge request susheel.busi/ont_pilot_gitlab!68
  0e08c8a7
- rgi figure: intersection plots (issue #31 ) · 56236664
  Valentina Galata authored 4 years ago
  
  56236664
- rgi figure: added hit type - all/strict/nudged (issue #31 ) · 11e4adbd
  Valentina Galata authored 4 years ago
  
  11e4adbd
- comment update in fig_plasflow.R · ed791a47
  Valentina Galata authored 4 years ago
  
  ed791a47
- rgi figure: rm legend (issue #31 ) · c4b33d4e
  Valentina Galata authored 4 years ago
  
  c4b33d4e
- added rgi figure (issue #31 ) · c9726ad4
  Valentina Galata authored 4 years ago
  
  c9726ad4
- added plasflow figure (issue #30 ) · 5cd1eb18
  Valentina Galata authored 4 years ago
  
  5cd1eb18
- changed name of main conda env · d9061116
  Valentina Galata authored 4 years ago
  
  d9061116
Jun 03, 2020
- Merge branch 'checkpoint_snakefile_VG' into 'checkpoint_snakefile' · 1a42ca25
  Susheel Busi authored 4 years ago
  
  Add PlasFlow and RGI See merge request susheel.busi/ont_pilot_gitlab!69
  1a42ca25
- config/import clean-up · ac10becd
  Valentina Galata authored 4 years ago
  
  ac10becd
- config/import clean-up · 00d122a1
  Valentina Galata authored 4 years ago
  
  00d122a1
- config/import clean-up: taxonomy · 39b63d3e
  Valentina Galata authored 4 years ago
  
  39b63d3e
- config/import clean-up: plot · be7ed38b
  Valentina Galata authored 4 years ago
  
  be7ed38b
- config/import clean-up: mmseq · fb908557
  Valentina Galata authored 4 years ago
  
  fb908557
- config/import clean-up: metaT · e45e1d93
  Valentina Galata authored 4 years ago
  
  e45e1d93
- config/import clean-up: mapping · a4b878ef
  Valentina Galata authored 4 years ago
  
  a4b878ef
- config/import clean-up: checkpoint assembly annotation · 5db187d4
  Valentina Galata authored 4 years ago
  
  5db187d4
- config/import clean-up: binning · 2f3f06fd
  Valentina Galata authored 4 years ago
  
  2f3f06fd
- config/import clean-up: binning · 3b6ed7ed
  Valentina Galata authored 4 years ago
  
  3b6ed7ed
- config/import clean-up: assembly annotation · 4bc62cb2
  Valentina Galata authored 4 years ago
  
  4bc62cb2
- config/import clean-up: assembly annotation · 3ae1c1cc
  Valentina Galata authored 4 years ago
  
  3ae1c1cc
- config/import clean-up: analysis · c574d4e1
  Valentina Galata authored 4 years ago
  
  c574d4e1
- config/import clean-up: analysis · 1e8401ff
  Valentina Galata authored 4 years ago
  
  1e8401ff
- made FAA temp in rgi input rules; other minor changes (issue #29 ) · 2ab9da0b
  Valentina Galata authored 4 years ago
  
  2ab9da0b