Commits · c463bddd88cbd29405f8e5e2c37a8ac1db659622 · ESB / ONT_pilot_gitlab

Oct 13, 2020
- conda: updated some yaml files · c463bddd
  Valentina Galata authored 4 years ago
  
  c463bddd
- conda: added yaml for mashmap (issue #95 ) · 38506b8f
  Valentina Galata authored 4 years ago
  
  38506b8f
- analysis: added mummer/dnadiff (issue #93 ) · 89ca49c5
  Valentina Galata authored 4 years ago
  
  89ca49c5
- analysis: added fastani (issue #80 ) · 448d72a1
  Valentina Galata authored 4 years ago
  
  448d72a1
Oct 08, 2020
- envs: simplified and updated assembler yaml files · e79ffb6b
  Valentina Galata authored 4 years ago
  
  e79ffb6b
Oct 07, 2020
- envs: added operams yaml · 03fdf14e
  Valentina Galata authored 4 years ago
  
  03fdf14e
- envs: simplified yaml for bbmap/fastqc/nanostat · 464a2b02
  Valentina Galata authored 4 years ago
  
  464a2b02
- new conda YAML for flye (issue #90 ) · bb732b00
  Valentina Galata authored 4 years ago
  
  bb732b00
Aug 19, 2020
- polishing update: changed polishing strategy, updated racon conda yaml to... · 1ffcfe82
  Valentina Galata authored 4 years ago
  
  polishing update: changed polishing strategy, updated racon conda yaml to replace bwa conda yaml (issue #81)
  1ffcfe82
Aug 14, 2020
- added canu conda yaml (issue #72 ) · 9fba72e5
  Valentina Galata authored 4 years ago
  
  9fba72e5
- added sortmerna: preproc rule, mapping rule for sr split into metag/metat... · 3cc031ec
  Valentina Galata authored 4 years ago
  
  added sortmerna: preproc rule, mapping rule for sr split into metag/metat (issue #49); mapping rule for hyhy assembly (issue #76)
  3cc031ec
Aug 03, 2020
- issue #72 : added wtdbg2 (LR assembler) · b6dfa4c7
  Valentina Galata authored 4 years ago
  
  b6dfa4c7
Jul 31, 2020
- issue #73 : added barrnap conda yaml; report: barrnap figure · 24f2c2bc
  Valentina Galata authored 4 years ago
  
  24f2c2bc
Jul 24, 2020
- added kaiju env (issue #67 ) · d8eca279
  Valentina Galata authored 4 years ago
  
  d8eca279
Jul 13, 2020
- updated fastqc.yaml · 86830543
  Valentina Galata authored 4 years ago
  
  86830543
Jul 09, 2020
- added mash analysis (issue #58 ) · e08b0f30
  Valentina Galata authored 4 years ago
  
  e08b0f30
- added circ_contigs_fasta.py (issue #53 ); added kraken2 (tax) (issue #55 ) · 334acc25
  Valentina Galata authored 4 years ago
  
  334acc25
Jun 30, 2020
- analysis step update: updated quast/bbmap/cdhit conda YAML; other minor updates · 7bc8732e
  Valentina Galata authored 4 years ago
  
  7bc8732e
Jun 26, 2020
- added conda YAML for mmseqs2 · 53e5cbd7
  Valentina Galata authored 4 years ago
  
  53e5cbd7
- minor change in conda YAML for cd-hit · 52ee688c
  Valentina Galata authored 4 years ago
  
  52ee688c
- rm old conda YAML for cd-hit · 60ed5480
  Valentina Galata authored 4 years ago
  
  60ed5480
- new conda YAML for cd-hit · ef74e76a
  Valentina Galata authored 4 years ago
  
  ef74e76a
- rm not used conda YAML files · 178b0e99
  Valentina Galata authored 4 years ago
  
  178b0e99
- conda YAML files for casc and minced (issue #41 and #42 ) · a7dbe097
  Valentina Galata authored 4 years ago
  
  a7dbe097
Jun 25, 2020
- updared diamond env (old one could not be build) · 12366758
  Valentina Galata authored 4 years ago
  
  12366758
- updared rgi env (old one could not be build) · 99f85045
  Valentina Galata authored 4 years ago
  
  99f85045
Jun 24, 2020
- assembly/mapping step: some fixes; added operams (issue #40 ) · e2acad95
  Valentina Galata authored 4 years ago
  
  e2acad95
Jun 09, 2020
- made all non-script files not executable; scripts are only executable by user and group · c372fce1
  Valentina Galata authored 4 years ago
  
  c372fce1
- mv workflows/rules/scripts/env/config/src from 2019_GDB · d4e02299
  Valentina Galata authored 4 years ago
  
  d4e02299